CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G02090.1	Thale cress	cytosol, nucleus, plastid	84.39	85.64
CDX90955	Canola	endoplasmic reticulum, extracellular	17.56	18.65
CDX91807	Canola	endoplasmic reticulum, extracellular	17.56	18.65
CDY22027	Canola	endoplasmic reticulum, extracellular	17.56	18.65
CDY59269	Canola	endoplasmic reticulum, extracellular	17.07	17.95
CDY41713	Canola	endoplasmic reticulum, extracellular	17.07	17.95
CDY65544	Canola	endoplasmic reticulum, extracellular	16.59	17.8
CDX93520	Canola	endoplasmic reticulum, golgi	16.59	17.62
CDX95000	Canola	endoplasmic reticulum, golgi	16.59	17.62
CDY31105	Canola	endoplasmic reticulum, golgi	16.59	17.62
CDY32159	Canola	endoplasmic reticulum, golgi	16.59	17.62
CDY39001	Canola	endoplasmic reticulum, extracellular	16.59	17.44
CDY06369	Canola	cytosol	13.17	14.84
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.17	14.67
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.17	14.67
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.2	13.59
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.2	13.59
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.2	13.59
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.2	13.59
CDX68554	Canola	cytosol	8.29	13.18
CDY37846	Canola	cytosol, mitochondrion, nucleus, plastid	7.8	12.5
CDY43583	Canola	cytosol	3.9	10.53
CDY01716	Canola	cytosol	10.24	9.33
CDY01715	Canola	cytosol	10.24	9.33
CDX74569	Canola	cytosol	10.24	9.29
CDY07095	Canola	endoplasmic reticulum	17.07	8.56

Protein Annotations

EnsemblPlants:CDY22028	EnsemblPlantsGene:GSBRNA2T00018392001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF19	PFAM:PF14009
ProteinID:CDY22028	ProteinID:CDY22028.1	SEG:seg	UniParc:UPI0004EEDD7F	UniProt:A0A078GBJ1	MapMan:35.2

Description

BnaA09g00570DBnaA09g00570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBJ1]

Coordinates

chrLK032127:+:130439..131056

Molecular Weight (calculated)

22258.6 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.405

Length

205 amino acids

Sequence
(BLAST)

001: MGNTIGSRKL ETAAMSGGKV VLSDGRVQNL EEETTVAEIM LENPQHVVVE FDPSSITFNK DGKTVKKKLT PLPADNTLEP GKIYLVLPAK RSGSGGGAKS
101: SSSSAVMTSE EIRKMLFSAT AMVRSSFSYY EGILPWFTTR SYSNSNPAVD AVVAATSVGK LEAETEEEGR PEFLSRQLSG RGWKPSLDPI KEKKAKKKIH
201: KLLSF

Best Arabidopsis Sequence Match ( AT4G02090.1 )
(BLAST)

001: MGNVAGSRKL DAAGMAAGKV VLSDGRVQNL EEETTVAEIM LENPQHVVVE FDPSSISFNN DAKTVKRKLA PLPADKTLEP GKIYLVLPAK RSGGRAAKSS
101: SAVLTSEEMR KMLFSATAMV RSSFSYYEGI LPWFTTRSYK NNNPATDTVV AATSVGRLEA EMEEEDRPEF LSRQLSGRGW KPSLDPIREK KAKKKIHQRF
201: LL

Arabidopsis Description

AGAA.5 [Source:UniProtKB/TrEMBL;Acc:O04712]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.