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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • cytosol 2
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74794
CDX80758
CDX89402
CDX89404
CDX94426
CDX94429
CDY04768
CDY18870
CDY21400
CDY25761
CDY37482
CDY49480
CDY51733
CDY51734
CDY55133
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02080.1 CDY04768 AT1G22920.1 21798944
AT4G02080.1 CDY21400 AT1G22920.1 21798944
AT4G02080.1 CDY25761 AT1G22920.1 21798944
AT4G02080.1 CDX74794 AT2G40380.1 21798944
AT4G02080.1 CDY18870 AT2G40380.1 21798944
AT4G02080.1 CDY37482 AT3G13720.1 21798944
AT4G02080.1 CDY51733 AT3G13720.1 21798944
AT4G02080.1 CDY51734 AT3G13720.1 21798944
AT4G02080.1 CDY55133 AT3G13720.1 21798944
AT4G02080.1 CDX89402 AT4G25680.1 21798944
AT4G02080.1 CDX89404 AT4G25680.1 21798944
AT4G02080.1 CDX94426 AT4G25680.1 21798944
AT4G02080.1 CDX94429 AT4G25680.1 21798944
AT4G02080.1 CDY49480 AT4G25680.1 21798944
AT4G02080.1 CDY66007 AT4G25680.1 21798944
AT4G02080.1 CDX80758 AT5G01640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90955 Canola endoplasmic reticulum, extracellular 99.48 99.48
CDX91807 Canola endoplasmic reticulum, extracellular 98.96 98.96
AT4G02080.1 Thale cress endoplasmic reticulum 98.45 98.45
TraesCS3B01G221700.1 Wheat endoplasmic reticulum, extracellular 95.34 95.34
Zm00001d040752_P001 Maize endoplasmic reticulum, extracellular 95.34 95.34
TraesCS3A01G193800.1 Wheat golgi 95.34 95.34
EES00709 Sorghum endoplasmic reticulum, extracellular 95.34 95.34
TraesCS5A01G089200.1 Wheat golgi 95.34 95.34
TraesCS3D01G196200.1 Wheat endoplasmic reticulum, extracellular 94.82 94.82
TraesCS5D01G101300.1 Wheat golgi 94.82 94.82
Os01t0338000-01 Rice plasma membrane 94.3 94.3
TraesCS5B01G095200.1 Wheat endoplasmic reticulum, extracellular 94.3 94.3
KXG23692 Sorghum endoplasmic reticulum, extracellular 93.78 93.78
CDY65544 Canola endoplasmic reticulum, extracellular 92.75 93.72
CDY59269 Canola endoplasmic reticulum, extracellular 94.3 93.33
CDY41713 Canola endoplasmic reticulum, extracellular 94.3 93.33
Solyc01g100350.2.1 Tomato plastid 93.26 93.26
Os01t0254000-01 Rice plasma membrane 93.26 93.26
Os12t0560300-01 Rice plasma membrane 93.26 93.26
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 93.26 93.26
CDY39001 Canola endoplasmic reticulum, extracellular 93.78 92.82
KRH68446 Soybean endoplasmic reticulum 92.75 92.75
KRH33832 Soybean endoplasmic reticulum 92.75 92.75
KRG92955 Soybean endoplasmic reticulum, extracellular 92.75 92.75
KRG96730 Soybean endoplasmic reticulum 92.75 92.75
EES02699 Sorghum endoplasmic reticulum, extracellular 92.23 92.23
Zm00001d040278_P001 Maize extracellular 92.23 92.23
TraesCS3A01G172900.1 Wheat golgi 91.71 91.71
CDY31105 Canola endoplasmic reticulum, golgi 91.71 91.71
TraesCS3B01G203800.1 Wheat endoplasmic reticulum 91.71 91.71
CDX95000 Canola endoplasmic reticulum, golgi 91.71 91.71
HORVU3Hr1G035000.2 Barley plasma membrane 91.71 91.71
CDX93520 Canola endoplasmic reticulum, golgi 91.71 91.71
CDY32159 Canola endoplasmic reticulum, golgi 91.19 91.19
VIT_16s0013g00170.t01 Wine grape cytosol 50.26 89.81
PGSC0003DMT400068658 Potato endoplasmic reticulum, extracellular 88.6 88.6
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 88.08 88.08
TraesCS3D01G179300.1 Wheat endoplasmic reticulum, extracellular 91.71 88.06
EES15193 Sorghum endoplasmic reticulum 79.27 78.46
KXG28257 Sorghum endoplasmic reticulum 78.24 77.84
TraesCS7B01G236300.1 Wheat cytosol 77.72 77.72
HORVU7Hr1G080190.1 Barley endoplasmic reticulum 77.2 77.2
TraesCS7D01G332100.1 Wheat endoplasmic reticulum 77.2 77.2
Os06t0225000-00 Rice endoplasmic reticulum 77.2 76.8
Zm00001d049068_P001 Maize cytosol 77.2 76.8
HORVU3Hr1G045150.3 Barley plastid 79.27 68.61
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 82.38 67.09
Zm00001d009211_P001 Maize mitochondrion 95.34 56.27
Bra036294.1-P Field mustard endoplasmic reticulum 99.48 47.06
CDY07095 Canola endoplasmic reticulum 99.48 46.94
CDY36501 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 32.64 34.24
CDY08727 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 32.64 34.24
CDY18665 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 32.12 33.7
CDY23031 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.61 33.15
CDX81307 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.61 33.15
CDY02106 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.61 33.15
CDY06369 Canola cytosol 30.05 31.87
CDY43583 Canola cytosol 12.44 31.58
GSMUA_Achr11P... Banana mitochondrion, plastid 34.72 27.57
CDY37846 Canola cytosol, mitochondrion, nucleus, plastid 18.13 27.34
CDX68554 Canola cytosol 17.1 25.58
CDY01716 Canola cytosol 28.5 24.44
CDY01715 Canola cytosol 28.5 24.44
CDX74569 Canola cytosol 28.5 24.34
CDY22028 Canola nucleus 18.65 17.56
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300GO:A0A078GAJ5UniProt:A0A078GAJ5EnsemblPlants:CDY22027ProteinID:CDY22027
ProteinID:CDY22027.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005794GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0015031GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00018391001InterPro:IPR006687
InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711PANTHER:PTHR11711:SF165
SMART:SM00177SMART:SM00178SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SARInterPro:Small_GTPase_SAR1
TIGRFAMs:TIGR00231UniParc:UPI0003E5E037SEG:seg:::
Description
BnaA09g00560DBnaA09g00560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAJ5]
Coordinates
chrLK032127:+:127821..129885
Molecular Weight (calculated)
22057.8 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.147
Length
193 amino acids
Sequence
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA TVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL VDSNVRPLEV FMCSIVRKMG YGEGFKWLSQ YIK
Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.