CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
endoplasmic reticulum 6
golgi 4
extracellular 3
vacuole 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
MultiLoc:	golgi
Plant-mPloc:	cytosol, endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93818
KRH00054
KRH00333
KRH02544
KRH08874
KRH10001
KRH14895
KRH19396
KRH22653
KRH23330
KRH26664
KRH32827
KRH35244
KRH38387
KRH39309
KRH39571
KRH44167
KRH47141
KRH48364
KRH49188
KRH49465
KRH52586
KRH54835
KRH61926
KRH65569
KRH73238
KRH74377
KRH76033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09180.1	KRH14895	AT2G40380.1	21798944
AT1G09180.1	KRH54835	AT2G40380.1	21798944
AT1G09180.1	KRH73238	AT2G40380.1	21798944
AT1G09180.1	KRH08874	AT4G25660.1	21798944
AT1G09180.1	KRH35244	AT4G25660.1	21798944
AT1G09180.1	KRH38387	AT4G25660.1	21798944
AT1G09180.1	KRH08874	AT4G25680.1	21798944
AT1G09180.1	KRH35244	AT4G25680.1	21798944
AT1G09180.1	KRH38387	AT4G25680.1	21798944
AT1G09180.1	KRG93818	AT5G01640.1	21798944
AT1G09180.1	KRH00333	AT5G01640.1	21798944
AT1G09180.1	KRH32827	AT5G01640.1	21798944
AT1G09180.1	KRH49465	AT5G01640.1	21798944
AT1G09180.1	KRH65569	AT5G01640.1	21798944
AT1G09180.1	KRH76033	AT5G01640.1	21798944
AT1G09180.1	KRH00054	AT5G02040.1	21798944
AT1G09180.1	KRH49188	AT5G02040.1	21798944
AT1G56330.1	KRH39309	AT2G20130.1	21798944
AT1G56330.1	KRH48364	AT2G20130.1	21798944
AT1G56330.1	KRH10001	AT3G13710.1	21798944
AT1G56330.1	KRH23330	AT3G13710.1	21798944
AT1G56330.1	KRH44167	AT3G13710.1	21798944
AT1G56330.1	KRH47141	AT3G13710.1	21798944
AT1G56330.1	KRH10001	AT3G13720.1	21798944
AT1G56330.1	KRH23330	AT3G13720.1	21798944
AT1G56330.1	KRH44167	AT3G13720.1	21798944
AT1G56330.1	KRH47141	AT3G13720.1	21798944
AT1G56330.1	KRH02544	AT3G43230.1	21798944
AT1G56330.1	KRH19396	AT3G43230.1	21798944
AT1G56330.1	KRH39571	AT4G17720.1	21798944
AT1G56330.1	KRH74377	AT4G17720.1	21798944
AT1G56330.1	KRG93818	AT5G01640.1	21798944
AT1G56330.1	KRH00333	AT5G01640.1	21798944
AT1G56330.1	KRH32827	AT5G01640.1	21798944
AT1G56330.1	KRH49465	AT5G01640.1	21798944
AT1G56330.1	KRH65569	AT5G01640.1	21798944
AT1G56330.1	KRH76033	AT5G01640.1	21798944
AT1G56330.1	KRH22653	AT5G22290.1	21798944
AT1G56330.1	KRH26664	AT5G22290.1	21798944
AT4G02080.1	KRH52586	AT1G22920.1	21798944
AT4G02080.1	KRH61926	AT1G22920.1	21798944
AT4G02080.1	KRH52586	AT1G71230.1	21798944
AT4G02080.1	KRH61926	AT1G71230.1	21798944
AT4G02080.1	KRH14895	AT2G40380.1	21798944
AT4G02080.1	KRH54835	AT2G40380.1	21798944
AT4G02080.1	KRH73238	AT2G40380.1	21798944
AT4G02080.1	KRH10001	AT3G13720.1	21798944
AT4G02080.1	KRH23330	AT3G13720.1	21798944
AT4G02080.1	KRH44167	AT3G13720.1	21798944
AT4G02080.1	KRH47141	AT3G13720.1	21798944
AT4G02080.1	KRH08874	AT4G25680.1	21798944
AT4G02080.1	KRH35244	AT4G25680.1	21798944
AT4G02080.1	KRH38387	AT4G25680.1	21798944
AT4G02080.1	KRG93818	AT5G01640.1	21798944
AT4G02080.1	KRH00333	AT5G01640.1	21798944
AT4G02080.1	KRH32827	AT5G01640.1	21798944
AT4G02080.1	KRH49465	AT5G01640.1	21798944
AT4G02080.1	KRH65569	AT5G01640.1	21798944
AT4G02080.1	KRH76033	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96730	Soybean	endoplasmic reticulum	98.96	98.96
KRH33832	Soybean	endoplasmic reticulum	95.34	95.34
KRG92955	Soybean	endoplasmic reticulum, extracellular	95.34	95.34
EES00709	Sorghum	endoplasmic reticulum, extracellular	94.82	94.82
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	94.82	94.82
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	94.3	94.3
TraesCS3A01G193800.1	Wheat	golgi	94.3	94.3
KRH50759	Soybean	endoplasmic reticulum	93.78	93.78
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	93.78	93.78
KRH02329	Soybean	endoplasmic reticulum, extracellular	93.26	93.26
TraesCS5A01G089200.1	Wheat	golgi	93.26	93.26
Os01t0338000-01	Rice	plasma membrane	93.26	93.26
AT4G02080.1	Thale cress	endoplasmic reticulum	93.26	93.26
KRH11980	Soybean	endoplasmic reticulum, extracellular	92.75	92.75
KXG23692	Sorghum	endoplasmic reticulum, extracellular	92.75	92.75
CDX90955	Canola	endoplasmic reticulum, extracellular	92.75	92.75
CDY22027	Canola	endoplasmic reticulum, extracellular	92.75	92.75
Bra000895.1-P	Field mustard	endoplasmic reticulum, extracellular	92.75	92.75
TraesCS5D01G101300.1	Wheat	golgi	92.75	92.75
KRH50760	Soybean	endoplasmic reticulum	92.75	92.75
KRH37008	Soybean	endoplasmic reticulum	92.75	92.75
KRH02328	Soybean	endoplasmic reticulum	92.23	92.23
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	92.23	92.23
CDX91807	Canola	endoplasmic reticulum, extracellular	92.23	92.23
AT3G62560.1	Thale cress	endoplasmic reticulum	92.23	92.23
Os12t0560300-01	Rice	plasma membrane	92.23	92.23
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	91.71	91.71
Solyc01g100350.2.1	Tomato	plastid	91.71	91.71
HORVU3Hr1G035000.2	Barley	plasma membrane	91.71	91.71
TraesCS3A01G172900.1	Wheat	golgi	91.71	91.71
PGSC0003DMT400007183	Potato	endoplasmic reticulum, golgi	91.71	91.71
AT1G56330.1	Thale cress	endoplasmic reticulum	91.71	91.71
Zm00001d040278_P001	Maize	extracellular	90.67	90.67
Os01t0254000-01	Rice	plasma membrane	90.67	90.67
EES02699	Sorghum	endoplasmic reticulum, extracellular	90.67	90.67
CDY65544	Canola	endoplasmic reticulum, extracellular	89.64	90.58
CDY59269	Canola	endoplasmic reticulum, extracellular	91.19	90.26
CDY41713	Canola	endoplasmic reticulum, extracellular	91.19	90.26
Bra027937.1-P	Field mustard	endoplasmic reticulum, extracellular	91.19	90.26
VIT_16s0013g00170.t01	Wine grape	cytosol	50.26	89.81
CDY39001	Canola	endoplasmic reticulum, extracellular	90.67	89.74
Bra038169.1-P	Field mustard	endoplasmic reticulum, extracellular	90.67	89.74
CDY31105	Canola	endoplasmic reticulum, golgi	89.12	89.12
CDX95000	Canola	endoplasmic reticulum, golgi	89.12	89.12
CDX93520	Canola	endoplasmic reticulum, golgi	89.12	89.12
Bra018576.1-P	Field mustard	endoplasmic reticulum, golgi	89.12	89.12
CDY32159	Canola	endoplasmic reticulum, golgi	88.6	88.6
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	91.71	88.06
AT1G09180.1	Thale cress	extracellular	87.56	87.56
PGSC0003DMT400068658	Potato	endoplasmic reticulum, extracellular	87.56	87.56
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	87.05	87.05
AT1G02620.1	Thale cress	endoplasmic reticulum	50.78	80.33
TraesCS7B01G236300.1	Wheat	cytosol	78.24	78.24
Os06t0225000-00	Rice	endoplasmic reticulum	78.24	77.84
EES15193	Sorghum	endoplasmic reticulum	78.24	77.44
KXG28257	Sorghum	endoplasmic reticulum	77.72	77.32
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	77.2	77.2
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	77.2	77.2
Zm00001d049068_P001	Maize	cytosol	77.2	76.8
HORVU3Hr1G045150.3	Barley	plastid	79.27	68.61
VIT_14s0060g01340.t01	Wine grape	endoplasmic reticulum, extracellular	82.38	67.09
Zm00001d009211_P001	Maize	mitochondrion	94.82	55.96
Bra036294.1-P	Field mustard	endoplasmic reticulum	92.23	43.63
CDY07095	Canola	endoplasmic reticulum	92.23	43.52
KRG91118	Soybean	extracellular	22.8	34.92
KRH58117	Soybean	endoplasmic reticulum	33.16	34.78
KRH77133	Soybean	endoplasmic reticulum	32.12	33.7
KRH28350	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.12	33.7
KRH72981	Soybean	cytosol	31.61	33.15
KRH17349	Soybean	cytosol	31.61	33.15
GSMUA_Achr11P...	Banana	mitochondrion, plastid	35.75	28.4

Protein Annotations

EntrezGene:100305650	MapMan:22.4.2.1	Gene3D:3.40.50.300	EMBL:ACUP02002116	EMBL:BT089363	UniProt:C6SW20
EnsemblPlantsGene:GLYMA_03G231800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016192	InterPro:IPR006687	ProteinID:KRH68445.1
EnsemblPlants:KRH68446	ProteinID:KRH68446	ProteinID:KRH68446.1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51422	PANTHER:PTHR11711	PANTHER:PTHR11711:SF165	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540
SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF/SAR	InterPro:Small_GTPase_SAR1	TIGRFAMs:TIGR00231	UniParc:UPI0001B159F6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:43310107..43312608

Molecular Weight (calculated)

22129.7 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.197

Length

193 amino acids

Sequence
(BLAST)

001: MFLWDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAQVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA NVPFLVLGNK IDIPYAASEE ELRYHLGLTN FTTGKGKVNL SDSNVRPMEV FMCSIVKKMG YGDGFKWVSQ YIK

Best Arabidopsis Sequence Match ( AT1G09180.1 )
(BLAST)

001: MFLFDWFYGI LASLGLCKKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKINFKAFD LGGHQIARRV WKDCYAKVDA VVYLVDAYDR
101: DRFVESKREL DALLSDEALA NVPCLILGNK IDIPYASSED ELRYYLGLTN FTTGKGIVNL EDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIK

Arabidopsis Description

ATSAR1Putative GTP-binding protein, SAR1B [Source:UniProtKB/TrEMBL;Acc:O80489]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.