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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • cytosol 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH28350 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 96.2 96.2
KRH77133 Soybean endoplasmic reticulum 95.65 95.65
PGSC0003DMT400055238 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 95.65 95.65
PGSC0003DMT400008577 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 95.11 95.11
Solyc02g092330.2.1 Tomato plastid 95.11 95.11
Solyc02g064640.2.1 Tomato extracellular 94.57 94.57
PGSC0003DMT400023482 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 94.02 94.02
VIT_00s0601g00030.t01 Wine grape cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 94.02 94.02
Solyc03g043960.2.1 Tomato plastid 93.48 93.48
GSMUA_Achr8P30960_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 93.48 93.48
CDY43583 Canola cytosol 38.59 93.42
AT3G49870.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 92.93 92.93
CDY23031 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 92.93 92.93
Bra012918.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 92.93 92.93
CDY02106 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 92.93 92.93
CDY08727 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 91.3 91.3
AT5G67560.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 91.3 91.3
Bra024440.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 91.3 91.3
CDY36501 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 90.76 90.76
CDY18665 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 90.76 90.76
Bra037841.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 90.22 90.22
CDX81307 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 89.67 89.67
GSMUA_AchrUn_... Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 89.67 89.67
GSMUA_Achr1P22490_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 88.04 88.04
Os03t0200800-01 Rice plasma membrane 87.5 87.5
TraesCS4B01G260300.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.41 86.41
TraesCS4D01G260100.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.41 86.41
EER92687 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.41 86.41
TraesCS4A01G045000.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.41 86.41
Zm00001d048155_P001 Maize extracellular 84.78 84.78
KRH72981 Soybean cytosol 84.24 84.24
KRH17349 Soybean cytosol 84.24 84.24
Zm00001d028112_P001 Maize extracellular 83.7 83.7
KRG91118 Soybean extracellular 53.8 78.57
AT3G49860.1 Thale cress cytosol 73.91 77.27
CDY06369 Canola cytosol 67.93 68.68
Bra031680.1-P Field mustard cytosol 60.33 68.1
HORVU4Hr1G070410.2 Barley cytosol 86.41 65.7
CDX68554 Canola cytosol 42.93 61.24
Bra029979.1-P Field mustard mitochondrion 36.96 40.48
KRH50759 Soybean endoplasmic reticulum 35.33 33.68
KRH02329 Soybean endoplasmic reticulum, extracellular 35.33 33.68
KRG96730 Soybean endoplasmic reticulum 34.78 33.16
KRH68446 Soybean endoplasmic reticulum 34.78 33.16
KRG92955 Soybean endoplasmic reticulum, extracellular 33.7 32.12
KRH33832 Soybean endoplasmic reticulum 33.15 31.61
KRH11980 Soybean endoplasmic reticulum, extracellular 33.15 31.61
KRH37008 Soybean endoplasmic reticulum 33.15 31.61
KRH02328 Soybean endoplasmic reticulum 32.61 31.09
KRH50760 Soybean endoplasmic reticulum 32.61 31.09
Protein Annotations
MapMan:26.10.2.4Gene3D:3.40.50.300EMBL:ACUP02003199EnsemblPlantsGene:GLYMA_05G105800GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0007154
GO:GO:0007165GO:GO:0007264GO:GO:0008150GO:GO:0009987UniProt:I1K2E4InterPro:IPR024156
EnsemblPlants:KRH58117ProteinID:KRH58117ProteinID:KRH58117.1InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328
PFscan:PS51417PANTHER:PTHR11711PANTHER:PTHR11711:SF293SMART:SM00175SMART:SM00177SMART:SM00178
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARFInterPro:Small_GTPase_ARF/SARTIGRFAMs:TIGR00231UniParc:UPI00023C4402
Description
hypothetical protein
Coordinates
chr5:+:28107283..28110397
Molecular Weight (calculated)
20535.0 Da
IEP (calculated)
8.319
GRAVY (calculated)
-0.043
Length
184 amino acids
Sequence
(BLAST)
001: MGLWESFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADP
101: DNLSISKSEL HDLLSKPSLS GIPLLVLGNK IDKPGVLSKE ALTDQMDLKS ITDREVCCFM ISCKNSTNID SVIDWLVKHS KSKS
Best Arabidopsis Sequence Match ( AT3G49870.1 )
(BLAST)
001: MGLLEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLTS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSKN
Arabidopsis Description
ARL8AADP-ribosylation factor-like protein 8a [Source:UniProtKB/Swiss-Prot;Acc:Q8VY57]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.