Factsheet for Solyc03g043960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023482	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.46	99.46
KRH28350	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.57	94.57
KRH77133	Soybean	endoplasmic reticulum	94.02	94.02
KRH58117	Soybean	endoplasmic reticulum	93.48	93.48
Solyc02g064640.2.1	Tomato	extracellular	93.48	93.48
CDY43583	Canola	cytosol	38.59	93.42
Solyc02g092330.2.1	Tomato	plastid	92.93	92.93
GSMUA_Achr8P30960_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.85	91.85
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.85	91.85
AT5G67560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.22	90.22
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
Bra012918.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
AT3G49870.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
Bra024440.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.59	88.59
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.59	88.59
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.04	88.04
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.04	88.04
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.5	87.5
Bra037841.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.5	87.5
GSMUA_Achr1P22490_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.96	86.96
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.96	86.96
Os03t0200800-01	Rice	plasma membrane	85.87	85.87
EER92687	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.78	84.78
TraesCS4D01G260100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.78	84.78
TraesCS4B01G260300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.78	84.78
TraesCS4A01G045000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.78	84.78
Zm00001d048155_P001	Maize	extracellular	83.15	83.15
Solyc11g011040.1.1	Tomato	plasma membrane	82.07	82.07
Zm00001d028112_P001	Maize	extracellular	81.52	81.52
AT3G49860.1	Thale cress	cytosol	73.37	76.7
CDY06369	Canola	cytosol	66.3	67.03
Bra031680.1-P	Field mustard	cytosol	59.24	66.87
HORVU4Hr1G070410.2	Barley	cytosol	84.78	64.46
CDX68554	Canola	cytosol	41.85	59.69
Bra029979.1-P	Field mustard	mitochondrion	36.41	39.88
Solyc01g079540.2.1	Tomato	plastid	34.24	32.64
Solyc06g009660.2.1	Tomato	extracellular	33.15	31.61
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	32.07	30.57
Solyc01g100350.2.1	Tomato	plastid	31.52	30.05

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4BG16	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF293	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc03g043960.2
EnsemblPlants:Solyc03g043960.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002768164	:	:	:

Description

No Description!

Coordinates

chr3:-:7754312..7761697

Molecular Weight (calculated)

20538.9 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.078

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDALLNW LRSLFFQQEM ELSLIGLQNA GKTSLVNVIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADH
101: DNVSISRSEI HDLLSKPSLN GIPLLVLGNK IDKPGALSKQ ALTDQMDLKS ITDREVCCYM ISCKNSTNID SVIDWLVKHS KSKS

Best Arabidopsis Sequence Match ( AT5G67560.1 )
(BLAST)

001: MGLWDALLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGSVTIKLWD LGGQPRFRSM WERYCRSVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLKS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSSN

Arabidopsis Description

ARL8BADP-ribosylation factor-like protein 8b [Source:UniProtKB/Swiss-Prot;Acc:Q93Y31]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.