Factsheet for Solyc01g079540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
endoplasmic reticulum 6
extracellular 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
MultiLoc:	extracellular
Plant-mPloc:	cytosol, endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023327	Potato	endoplasmic reticulum, extracellular	99.48	99.48
Solyc06g009660.2.1	Tomato	extracellular	97.93	97.93
VIT_07s0005g01330.t01	Wine grape	endoplasmic reticulum, extracellular	95.34	95.34
Solyc01g100350.2.1	Tomato	plastid	95.34	95.34
EES00709	Sorghum	endoplasmic reticulum, extracellular	94.3	94.3
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	94.3	94.3
TraesCS5A01G089200.1	Wheat	golgi	93.78	93.78
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	93.78	93.78
TraesCS3A01G193800.1	Wheat	golgi	93.78	93.78
KXG23692	Sorghum	endoplasmic reticulum, extracellular	93.78	93.78
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	93.26	93.26
Os01t0338000-01	Rice	plasma membrane	93.26	93.26
Os12t0560300-01	Rice	plasma membrane	93.26	93.26
TraesCS5D01G101300.1	Wheat	golgi	93.26	93.26
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	92.75	92.75
Os01t0254000-01	Rice	plasma membrane	92.23	92.23
KRH50760	Soybean	endoplasmic reticulum	91.71	91.71
Zm00001d040278_P001	Maize	extracellular	91.19	91.19
KRH02328	Soybean	endoplasmic reticulum	91.19	91.19
EES02699	Sorghum	endoplasmic reticulum, extracellular	91.19	91.19
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	90.16	90.16
HORVU3Hr1G035000.2	Barley	plasma membrane	90.16	90.16
TraesCS3A01G172900.1	Wheat	golgi	90.16	90.16
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	90.16	90.16
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	90.16	86.57
EES15193	Sorghum	endoplasmic reticulum	80.31	79.49
Os06t0225000-00	Rice	endoplasmic reticulum	79.27	78.87
KXG28257	Sorghum	endoplasmic reticulum	79.27	78.87
Zm00001d049068_P001	Maize	cytosol	78.76	78.35
TraesCS7B01G236300.1	Wheat	cytosol	78.24	78.24
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	77.72	77.72
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	77.72	77.72
HORVU3Hr1G045150.3	Barley	plastid	78.24	67.71
Zm00001d009211_P001	Maize	mitochondrion	94.3	55.66
VIT_02s0033g01130.t01	Wine grape	cytosol	45.08	48.88
Solyc03g043960.2.1	Tomato	plastid	32.64	34.24
Solyc02g064640.2.1	Tomato	extracellular	32.64	34.24
Solyc02g092330.2.1	Tomato	plastid	32.12	33.7
Solyc11g011040.1.1	Tomato	plasma membrane	31.61	33.15

Protein Annotations

MapMan:22.4.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016192	InterPro:IPR006687
UniProt:K4AXJ9	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51422	PANTHER:PTHR11711
PANTHER:PTHR11711:SF165	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF/SAR
InterPro:Small_GTPase_SAR1	EnsemblPlantsGene:Solyc01g079540.2	EnsemblPlants:Solyc01g079540.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002761D43	SEG:seg

Description

No Description!

Coordinates

chr1:+:78611438..78620587

Molecular Weight (calculated)

21925.5 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.108

Length

193 amino acids

Sequence
(BLAST)

001: MFLFDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA TVPFLILGNK IDIPYAASED ELRYHLGLTG VTTGKGKVNL ADSSVRPLEV FMCSIVRKMG YGDGFKWVSQ YIK

Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)

001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK

Arabidopsis Description

SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.