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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • endoplasmic reticulum 6
  • extracellular 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:extracellular
Plant-mPloc:cytosol, endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
 plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0827400-01
Os01t0847900-01
Os02t0269000-01
Os04t0594400-01
Os04t0624800-01
Os04t0654700-02
Os05t0200280-01
Os05t0455600-01
Os05t0474400-01
Os05t0529000-01
Os06t0107000-01
Os06t0112400-01
Os07t0272400-01
Os07t0616900-01
Os11t0107600-01
Os12t0107600-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09180.1 Os06t0107000-01 AT4G25660.1 21798944
AT1G09180.1 Os06t0107000-01 AT4G25680.1 21798944
AT1G09180.1 Os01t0827400-01 AT5G01640.1 21798944
AT1G09180.1 Os05t0474400-01 AT5G01640.1 21798944
AT1G09180.1 Os11t0107600-01 AT5G01640.1 21798944
AT1G09180.1 Os12t0107600-00 AT5G01640.1 21798944
AT1G09180.1 Os01t0847900-01 AT5G02040.1 21798944
AT1G09180.1 Os05t0455600-01 AT5G02040.1 21798944
AT1G56330.1 Os02t0269000-01 AT2G20130.1 21798944
AT1G56330.1 Os05t0529000-01 AT2G20130.1 21798944
AT1G56330.1 Os01t0196500-01 AT3G13710.1 21798944
AT1G56330.1 Os05t0200280-01 AT3G13710.1 21798944
AT1G56330.1 Os01t0196500-01 AT3G13720.1 21798944
AT1G56330.1 Os05t0200280-01 AT3G13720.1 21798944
AT1G56330.1 Os07t0272400-01 AT3G43230.1 21798944
AT1G56330.1 Os07t0616900-01 AT3G43230.1 21798944
AT1G56330.1 Os04t0594400-01 AT4G17720.1 21798944
AT1G56330.1 Os04t0624800-01 AT4G17720.1 21798944
AT1G56330.1 Os06t0112400-01 AT4G17720.1 21798944
AT1G56330.1 Os01t0827400-01 AT5G01640.1 21798944
AT1G56330.1 Os05t0474400-01 AT5G01640.1 21798944
AT1G56330.1 Os11t0107600-01 AT5G01640.1 21798944
AT1G56330.1 Os12t0107600-00 AT5G01640.1 21798944
AT4G02080.1 Os04t0654700-02 AT1G22920.1 21798944
AT4G02080.1 Os04t0654700-02 AT1G71230.1 21798944
AT4G02080.1 Os01t0196500-01 AT3G13720.1 21798944
AT4G02080.1 Os05t0200280-01 AT3G13720.1 21798944
AT4G02080.1 Os06t0107000-01 AT4G25680.1 21798944
AT4G02080.1 Os01t0827400-01 AT5G01640.1 21798944
AT4G02080.1 Os05t0474400-01 AT5G01640.1 21798944
AT4G02080.1 Os11t0107600-01 AT5G01640.1 21798944
AT4G02080.1 Os12t0107600-00 AT5G01640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d040752_P001 Maize endoplasmic reticulum, extracellular 98.45 98.45
EES00709 Sorghum endoplasmic reticulum, extracellular 98.45 98.45
TraesCS3B01G221700.1 Wheat endoplasmic reticulum, extracellular 97.41 97.41
TraesCS3A01G193800.1 Wheat golgi 97.41 97.41
TraesCS3D01G196200.1 Wheat endoplasmic reticulum, extracellular 96.89 96.89
Os12t0560300-01 Rice plasma membrane 96.37 96.37
AT4G02080.1 Thale cress endoplasmic reticulum 94.82 94.82
Bra000895.1-P Field mustard endoplasmic reticulum, extracellular 94.3 94.3
CDX90955 Canola endoplasmic reticulum, extracellular 94.3 94.3
CDY22027 Canola endoplasmic reticulum, extracellular 94.3 94.3
VIT_05s0077g01230.t01 Wine grape endoplasmic reticulum, extracellular 93.78 93.78
CDX91807 Canola endoplasmic reticulum, extracellular 93.78 93.78
KRH68446 Soybean endoplasmic reticulum 93.26 93.26
KRG96730 Soybean endoplasmic reticulum 93.26 93.26
Os01t0254000-01 Rice plasma membrane 93.26 93.26
Solyc01g079540.2.1 Tomato plastid 93.26 93.26
PGSC0003DMT400023327 Potato endoplasmic reticulum, extracellular 93.26 93.26
Solyc06g009660.2.1 Tomato extracellular 92.75 92.75
KRH50759 Soybean endoplasmic reticulum 92.75 92.75
PGSC0003DMT400018800 Potato cytosol 92.75 92.75
VIT_07s0005g01330.t01 Wine grape endoplasmic reticulum, extracellular 92.75 92.75
AT3G62560.1 Thale cress endoplasmic reticulum 92.75 92.75
AT1G56330.1 Thale cress endoplasmic reticulum 92.23 92.23
KRH02329 Soybean endoplasmic reticulum, extracellular 92.23 92.23
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 91.19 91.19
Solyc01g100350.2.1 Tomato plastid 91.19 91.19
KRH33832 Soybean endoplasmic reticulum 91.19 91.19
CDX95000 Canola endoplasmic reticulum, golgi 91.19 91.19
CDX93520 Canola endoplasmic reticulum, golgi 91.19 91.19
KRG92955 Soybean endoplasmic reticulum, extracellular 91.19 91.19
Bra018576.1-P Field mustard endoplasmic reticulum, golgi 91.19 91.19
CDY65544 Canola endoplasmic reticulum, extracellular 90.16 91.1
KRH11980 Soybean endoplasmic reticulum, extracellular 90.67 90.67
CDY31105 Canola endoplasmic reticulum, golgi 90.67 90.67
KRH37008 Soybean endoplasmic reticulum 90.67 90.67
Bra027937.1-P Field mustard endoplasmic reticulum, extracellular 91.19 90.26
CDY59269 Canola endoplasmic reticulum, extracellular 91.19 90.26
CDY41713 Canola endoplasmic reticulum, extracellular 91.19 90.26
CDY32159 Canola endoplasmic reticulum, golgi 90.16 90.16
Bra038169.1-P Field mustard endoplasmic reticulum, extracellular 90.67 89.74
CDY39001 Canola endoplasmic reticulum, extracellular 90.67 89.74
KRH50760 Soybean endoplasmic reticulum 89.64 89.64
KRH02328 Soybean endoplasmic reticulum 89.12 89.12
AT1G09180.1 Thale cress extracellular 86.53 86.53
PGSC0003DMT400068658 Potato endoplasmic reticulum, extracellular 86.53 86.53
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 86.01 86.01
VIT_16s0013g00170.t01 Wine grape cytosol 47.67 85.19
AT1G02620.1 Thale cress endoplasmic reticulum 50.26 79.51
Os06t0225000-00 Rice endoplasmic reticulum 78.76 78.35
VIT_05s0165g00230.t01 Wine grape cytosol 68.91 78.24
HORVU3Hr1G045150.3 Barley plastid 81.35 70.4
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 81.87 66.67
Zm00001d009211_P001 Maize mitochondrion 98.45 58.1
VIT_02s0033g01130.t01 Wine grape cytosol 44.04 47.75
Bra036294.1-P Field mustard endoplasmic reticulum 93.78 44.36
CDY07095 Canola endoplasmic reticulum 93.78 44.25
Os03t0200800-01 Rice plasma membrane 32.12 33.7
Os02t0732500-01 Rice plasma membrane 31.09 32.61
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300EntrezGene:4326797EMBL:AK103351EMBL:AK112012ProteinID:BAB63877.1
ProteinID:BAB67979.1ProteinID:BAF04856.1ProteinID:BAS71954.1ProteinID:EAZ11741.1GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005794GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0015031
GO:GO:0016192InterPro:IPR006687EnsemblPlantsGene:Os01g0338000EnsemblPlants:Os01t0338000-01InterPro:P-loop_NTPasePFAM:PF00025
PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711PANTHER:PTHR11711:SF165UniProt:Q93W16SMART:SM00177
SMART:SM00178SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SARInterPro:Small_GTPase_SAR1TIGRFAMs:TIGR00231
UniParc:UPI00000A62ECRefSeq:XP_015621967.1SEG:seg:::
Description
ARF-like protein 1eSimilar to GTP-binding protein SAR1A. (Os01t0338000-01);Similar to GTP-binding protein SAR1A. (Os01t0338000-02)
Coordinates
chr1:+:13286103..13288360
Molecular Weight (calculated)
21985.6 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.161
Length
193 amino acids
Sequence
(BLAST)
001: MFLWDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDDSLA AVPFLILGNK IDIPYAASEE ELRYHLGLSN FTTGKGKVSL GESNVRPLEV FMCSVVRKMG YGDGFKWVSQ YIK
Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.