Factsheet for Os02t0732500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 18557835
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0641400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	Os04t0641400-02	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05578	Sorghum	cytosol	98.91	98.91
TraesCS6D01G274800.1	Wheat	cytosol	94.02	94.02
TraesCS6B01G324400.2	Wheat	cytosol	94.02	94.02
TraesCS6A01G293900.1	Wheat	cytosol	94.02	94.02
HORVU6Hr1G073370.2	Barley	cytosol	93.48	93.48
KRH17349	Soybean	cytosol	92.93	92.93
KRH72981	Soybean	cytosol	92.93	92.93
Bra028142.1-P	Field mustard	cytosol	90.22	90.22
AT5G37680.1	Thale cress	cytosol	90.22	90.22
GSMUA_Achr6P23020_001	Banana	cytosol	90.22	90.22
Solyc11g011040.1.1	Tomato	plasma membrane	90.22	90.22
PGSC0003DMT400040524	Potato	cytosol, plastid	79.35	88.48
VIT_14s0006g01090.t01	Wine grape	cytosol	74.46	83.03
Zm00001d000379_P002	Maize	mitochondrion	98.91	80.53
Zm00001d017945_P002	Maize	mitochondrion	84.24	79.49
Os03t0200800-01	Rice	plasma membrane	77.72	77.72
CDY01716	Canola	cytosol	78.8	64.44
CDY01715	Canola	cytosol	78.8	64.44
CDX74569	Canola	cytosol	78.8	64.16
Os06t0225000-00	Rice	endoplasmic reticulum	35.87	34.02
Os01t0338000-01	Rice	plasma membrane	32.61	31.09
Os12t0560300-01	Rice	plasma membrane	32.07	30.57
Os01t0254000-01	Rice	plasma membrane	32.07	30.57

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	EntrezGene:4330631	EMBL:AK111722	ProteinID:BAD16140.1	ProteinID:BAF09941.1
ProteinID:BAS80767.1	ProteinID:EEE57753.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0051607	InterPro:IPR024156	EnsemblPlantsGene:Os02g0732500	EnsemblPlants:Os02t0732500-01	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	UniProt:Q6Z2K0
SMART:SM00173	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0000358C94	RefSeq:XP_015622813.1	:

Description

ARF-like protein 1bSimilar to ADP-ribosylation factor-like protein. (Os02t0732500-01)

Coordinates

chr2:-:30533422..30536326

Molecular Weight (calculated)

20621.3 Da

IEP (calculated)

8.622

GRAVY (calculated)

0.018

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRTM WERYCRGVSA ILYVVDAADR
101: DSIPIAKSEL HDLLTKQSLA GIPLLVLGNK IDKSEAVSKQ ALVDQLGLEL IKDREVCCYM ISCKDSVNID VVIDWLIKHS RTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.