Factsheet for TraesCS6D01G274800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT5G37680.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT5G37680.1	TraesCS2D01G523400.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G324400.2	Wheat	cytosol	100.0	100.0
TraesCS6A01G293900.1	Wheat	cytosol	100.0	100.0
HORVU6Hr1G073370.2	Barley	cytosol	99.46	99.46
EES05578	Sorghum	cytosol	95.11	95.11
Os02t0732500-01	Rice	plasma membrane	94.02	94.02
KRH17349	Soybean	cytosol	93.48	93.48
KRH72981	Soybean	cytosol	93.48	93.48
Bra028142.1-P	Field mustard	cytosol	91.3	91.3
Solyc11g011040.1.1	Tomato	plasma membrane	91.3	91.3
AT5G37680.1	Thale cress	cytosol	90.76	90.76
PGSC0003DMT400040524	Potato	cytosol, plastid	80.98	90.3
GSMUA_Achr6P23020_001	Banana	cytosol	89.13	89.13
VIT_14s0006g01090.t01	Wine grape	cytosol	75.54	84.24
Zm00001d000379_P002	Maize	mitochondrion	95.11	77.43
TraesCS4D01G260100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.63	76.63
Zm00001d017945_P002	Maize	mitochondrion	80.98	76.41
CDY01716	Canola	cytosol	80.98	66.22
CDY01715	Canola	cytosol	80.98	66.22
CDX74569	Canola	cytosol	80.98	65.93
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	33.15	31.61
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	32.61	31.09
TraesCS5D01G101300.1	Wheat	golgi	32.07	30.57
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	32.61	29.85

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0051607	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00173	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS6D01G274800	EnsemblPlants:TraesCS6D01G274800.1	TIGR:cd04159	:	:	:

Description

No Description!

Coordinates

chr6D:-:383544668..383546908

Molecular Weight (calculated)

20596.2 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.020

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNSIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRTM WERYCRGVTA ILYVVDAADR
101: DSVPIAKSEL HDLLTKQSLS GIPLLILGNK IDKSEALSKP ALVDQLGLES IKDREVCCYM ISCKDSVNID VVIDWLIKHS KTAN

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.