Factsheet for PGSC0003DMT400040524

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	PGSC0003DMT400065786	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011040.1.1	Tomato	plasma membrane	98.79	88.59
VIT_14s0006g01090.t01	Wine grape	cytosol	87.27	87.27
KRH17349	Soybean	cytosol	91.52	82.07
KRH72981	Soybean	cytosol	91.52	82.07
Bra028142.1-P	Field mustard	cytosol	90.3	80.98
TraesCS6D01G274800.1	Wheat	cytosol	90.3	80.98
TraesCS6B01G324400.2	Wheat	cytosol	90.3	80.98
GSMUA_Achr6P23020_001	Banana	cytosol	90.3	80.98
TraesCS6A01G293900.1	Wheat	cytosol	90.3	80.98
EES05578	Sorghum	cytosol	89.7	80.43
HORVU6Hr1G073370.2	Barley	cytosol	89.7	80.43
AT5G37680.1	Thale cress	cytosol	89.7	80.43
Os02t0732500-01	Rice	plasma membrane	88.48	79.35
PGSC0003DMT400023482	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.42	73.91
PGSC0003DMT400055238	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.82	73.37
PGSC0003DMT400008577	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.21	72.83
Zm00001d017945_P002	Maize	mitochondrion	78.18	66.15
Zm00001d000379_P002	Maize	mitochondrion	89.7	65.49
CDY01716	Canola	cytosol	77.58	56.89
CDY01715	Canola	cytosol	77.58	56.89
CDX74569	Canola	cytosol	77.58	56.64
PGSC0003DMT400068658	Potato	endoplasmic reticulum, extracellular	33.94	29.02
PGSC0003DMT400023327	Potato	endoplasmic reticulum, extracellular	33.33	28.5
PGSC0003DMT400018800	Potato	cytosol	32.12	27.46
PGSC0003DMT400007183	Potato	endoplasmic reticulum, golgi	31.52	26.94

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:M1BA07	InterPro:P-loop_NTPase	PFAM:PF00025
EnsemblPlantsGene:PGSC0003DMG400015679	PGSC:PGSC0003DMG400015679	EnsemblPlants:PGSC0003DMT400040524	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF303	SMART:SM00173	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0002957892	:

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015679]

Coordinates

chr11:+:1918134..1923616

Molecular Weight (calculated)

18288.3 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.055

Length

165 amino acids

Sequence
(BLAST)

001: MELSLIGLQN AGKTSLVNAI ATGGYSEDMI PTVGFNMRKV TKGNVTIKLW DLGGQRRFRT MWERYCRGVS AILYVVDAAD RDSVPITRTE LHELLKKPSL
101: SGIPLLILGN KIDKSEALSQ QSLVDQLGLD SITDREVCCY MISCKDSVNI DAVIDWLIKH SKTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.