Factsheet for HORVU6Hr1G073370.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G115210.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	HORVU2Hr1G115210.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G274800.1	Wheat	cytosol	99.46	99.46
TraesCS6B01G324400.2	Wheat	cytosol	99.46	99.46
TraesCS6A01G293900.1	Wheat	cytosol	99.46	99.46
EES05578	Sorghum	cytosol	94.57	94.57
Os02t0732500-01	Rice	plasma membrane	93.48	93.48
KRH72981	Soybean	cytosol	92.93	92.93
KRH17349	Soybean	cytosol	92.93	92.93
Bra028142.1-P	Field mustard	cytosol	90.76	90.76
Solyc11g011040.1.1	Tomato	plasma membrane	90.76	90.76
AT5G37680.1	Thale cress	cytosol	90.22	90.22
PGSC0003DMT400040524	Potato	cytosol, plastid	80.43	89.7
GSMUA_Achr6P23020_001	Banana	cytosol	88.59	88.59
VIT_14s0006g01090.t01	Wine grape	cytosol	75.0	83.64
Zm00001d000379_P002	Maize	mitochondrion	94.57	76.99
Zm00001d017945_P002	Maize	mitochondrion	80.43	75.9
CDY01716	Canola	cytosol	80.98	66.22
CDY01715	Canola	cytosol	80.98	66.22
CDX74569	Canola	cytosol	80.98	65.93
HORVU4Hr1G070410.2	Barley	cytosol	76.09	57.85
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	32.61	31.09
HORVU3Hr1G035000.2	Barley	plasma membrane	32.61	31.09
HORVU3Hr1G045150.3	Barley	plastid	30.43	25.11

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	EMBL:AK370981	UniProt:F2E4A7	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0051607	EnsemblPlantsGene:HORVU6Hr1G073370	EnsemblPlants:HORVU6Hr1G073370.2	InterPro:IPR024156	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00173
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0002007BC4	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E4A7]

Coordinates

chrchr6H:+:508572870..508575570

Molecular Weight (calculated)

20614.2 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.034

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNSIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRTM WERYCRGVTA ILYVVDAADR
101: DSVPIAKSEL HDLLTKQSLS GIPLLILGNK IDKSEALSKP ALVDQLGLES IKDREVCCYM ISCKDSVNID VVMDWLIKHS KTAN

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.