Factsheet for VIT_14s0006g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040524	Potato	cytosol, plastid	87.27	87.27
Solyc11g011040.1.1	Tomato	plasma membrane	87.27	78.26
KRH17349	Soybean	cytosol	86.06	77.17
KRH72981	Soybean	cytosol	86.06	77.17
AT5G37680.1	Thale cress	cytosol	84.24	75.54
TraesCS6D01G274800.1	Wheat	cytosol	84.24	75.54
TraesCS6B01G324400.2	Wheat	cytosol	84.24	75.54
TraesCS6A01G293900.1	Wheat	cytosol	84.24	75.54
EES05578	Sorghum	cytosol	84.24	75.54
Bra028142.1-P	Field mustard	cytosol	83.64	75.0
HORVU6Hr1G073370.2	Barley	cytosol	83.64	75.0
GSMUA_Achr6P23020_001	Banana	cytosol	83.03	74.46
Os02t0732500-01	Rice	plasma membrane	83.03	74.46
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.97	69.02
VIT_03s0091g00970.t01	Wine grape	cytosol	76.36	68.48
Zm00001d017945_P002	Maize	mitochondrion	73.33	62.05
Zm00001d000379_P002	Maize	mitochondrion	84.24	61.5
VIT_15s0024g01360.t01	Wine grape	cytosol	16.97	58.33
CDY01715	Canola	cytosol	72.73	53.33
CDY01716	Canola	cytosol	72.73	53.33
CDX74569	Canola	cytosol	72.73	53.1
VIT_16s0013g00170.t01	Wine grape	cytosol	20.0	30.56
VIT_07s0005g01330.t01	Wine grape	endoplasmic reticulum, extracellular	33.33	28.5
VIT_05s0077g01230.t01	Wine grape	endoplasmic reticulum, extracellular	32.73	27.98
VIT_05s0165g00230.t01	Wine grape	cytosol	28.48	27.65
VIT_14s0060g01340.t01	Wine grape	endoplasmic reticulum, extracellular	29.7	20.68
VIT_02s0033g01130.t01	Wine grape	cytosol	19.39	17.98

Protein Annotations

EntrezGene:100244974	wikigene:100244974	MapMan:26.10.2.4	Gene3D:3.40.50.300	ProteinID:CCB57635	ProteinID:CCB57635.1
UniProt:F6HSJ5	EMBL:FN596245	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	EntrezGene:LOC100244974	wikigene:LOC100244974	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI00015C990C	ArrayExpress:VIT_14s0006g01090	EnsemblPlantsGene:VIT_14s0006g01090	EnsemblPlants:VIT_14s0006g01090.t01	unigene:Vvi.2060
RefSeq:XP_002276052	RefSeq:XP_002276052.1	:	:	:	:

Description

No Description!

Coordinates

chr14:-:16203503..16205739

Molecular Weight (calculated)

18153.1 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.007

Length

165 amino acids

Sequence
(BLAST)

001: MELSLIGLQN AGKTSLLNAI ATGGYSEDMI PTVGFNMRKV TKGNVIIKVW DLGGQQRFRT MWERYCRGVS AILYVVDAAD RDSVPISRSE LHSLLTKPSL
101: TGIPLLVVGN KIDRSEALSE QSLVGQLDLK SITGREVGCY MISCKDSVNI DLVIDWLIKH SKTPN

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.