Factsheet for Bra028142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016705.1-P
Bra019660.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	Bra016705.1-P	AT1G14340.1	21798944
AT5G37680.1	Bra019660.1-P	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G37680.1	Thale cress	cytosol	97.28	97.28
KRH17349	Soybean	cytosol	92.39	92.39
KRH72981	Soybean	cytosol	92.39	92.39
Solyc11g011040.1.1	Tomato	plasma membrane	91.85	91.85
TraesCS6D01G274800.1	Wheat	cytosol	91.3	91.3
TraesCS6B01G324400.2	Wheat	cytosol	91.3	91.3
TraesCS6A01G293900.1	Wheat	cytosol	91.3	91.3
EES05578	Sorghum	cytosol	91.3	91.3
HORVU6Hr1G073370.2	Barley	cytosol	90.76	90.76
PGSC0003DMT400040524	Potato	cytosol, plastid	80.98	90.3
Os02t0732500-01	Rice	plasma membrane	90.22	90.22
GSMUA_Achr6P23020_001	Banana	cytosol	87.5	87.5
VIT_14s0006g01090.t01	Wine grape	cytosol	75.0	83.64
Bra024440.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.26	78.26
Bra012918.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.26	78.26
Bra037841.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.17	77.17
Zm00001d000379_P002	Maize	mitochondrion	91.3	74.34
Zm00001d017945_P002	Maize	mitochondrion	77.72	73.33
CDY01716	Canola	cytosol	87.5	71.56
CDY01715	Canola	cytosol	87.5	71.56
CDX74569	Canola	cytosol	87.5	71.24
Bra031680.1-P	Field mustard	cytosol	53.26	60.12
Bra029979.1-P	Field mustard	mitochondrion	33.15	36.31
Bra000895.1-P	Field mustard	endoplasmic reticulum, extracellular	32.07	30.57
Bra038169.1-P	Field mustard	endoplasmic reticulum, extracellular	32.07	30.26
Bra027937.1-P	Field mustard	endoplasmic reticulum, extracellular	32.07	30.26
Bra018576.1-P	Field mustard	endoplasmic reticulum, golgi	31.52	30.05
Bra036294.1-P	Field mustard	endoplasmic reticulum	32.07	14.46

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra028142	EnsemblPlants:Bra028142.1	EnsemblPlants:Bra028142.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0051607	InterPro:IPR024156	UniProt:M4EH77	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00173
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00025443CD	:	:	:

Description

AT5G37680 (E=3e-100) ATARLA1A | ATARLA1A (ADP-ribosylation factor-like A1A); GTP binding

Coordinates

chrA04:-:6073591..6074736

Molecular Weight (calculated)

20549.1 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.008

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL HDLLTKPSLN GIPLLILGNK IDKSEALSKP ALVDQLGLDS VADREVCCYM ISCKDSINID AVIDWLIKHS RTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.