Factsheet for Zm00001d000379_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d026425_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT5G37680.1	Zm00001d026425_P003	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05578	Sorghum	cytosol	81.42	100.0
Os02t0732500-01	Rice	plasma membrane	80.53	98.91
TraesCS6D01G274800.1	Wheat	cytosol	77.43	95.11
TraesCS6B01G324400.2	Wheat	cytosol	77.43	95.11
TraesCS6A01G293900.1	Wheat	cytosol	77.43	95.11
HORVU6Hr1G073370.2	Barley	cytosol	76.99	94.57
KRH17349	Soybean	cytosol	76.55	94.02
KRH72981	Soybean	cytosol	76.55	94.02
Bra028142.1-P	Field mustard	cytosol	74.34	91.3
Solyc11g011040.1.1	Tomato	plasma membrane	74.34	91.3
GSMUA_Achr6P23020_001	Banana	cytosol	74.34	91.3
AT5G37680.1	Thale cress	cytosol	74.34	91.3
PGSC0003DMT400040524	Potato	cytosol, plastid	65.49	89.7
VIT_14s0006g01090.t01	Wine grape	cytosol	61.5	84.24
Zm00001d017945_P002	Maize	mitochondrion	68.58	79.49
Zm00001d028112_P001	Maize	extracellular	61.5	75.54
Zm00001d048155_P001	Maize	extracellular	61.5	75.54
CDY01716	Canola	cytosol	65.04	65.33
CDY01715	Canola	cytosol	65.04	65.33
CDX74569	Canola	cytosol	65.04	65.04
Zm00001d049068_P001	Maize	cytosol	28.32	32.99
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	26.55	31.09
Zm00001d040278_P001	Maize	extracellular	25.66	30.05
Zm00001d009211_P001	Maize	mitochondrion	27.43	18.96

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	UniProt:A0A1X7YII1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00173	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI00084410A0	EnsemblPlantsGene:Zm00001d000379	EnsemblPlants:Zm00001d000379_P002	EnsemblPlants:Zm00001d000379_T002	:

Description

ADP-ribosylation factor-like A1A

Coordinates

chrB73V4_ctg24:+:12019..14648

Molecular Weight (calculated)

24810.4 Da

IEP (calculated)

8.993

GRAVY (calculated)

0.069

Length

226 amino acids

Sequence
(BLAST)

001: MAIVSLGPVP CRFVVRPLPR APSSSGFPSR DPALGAVAGE SGMGLWDSLL NWLRSLFFKQ EMELSLVGLQ NAGKTSLVNA VATGGYSEDM IPTVGFNMRK
101: VTKGNVTIKL WDLGGQRRFR TMWERYCRGV SAILYVVDAA DRDSVPIAKS ELHDLLTKQS LAGIPLLVLG NKIDKSEALS KQALVDQLGL ELIKDREVCC
201: YMISCKDSVN IDVVIDWLIK HSRTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.