Factsheet for Solyc11g011040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	Solyc05g007200.2.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040524	Potato	cytosol, plastid	88.59	98.79
Bra028142.1-P	Field mustard	cytosol	91.85	91.85
KRH72981	Soybean	cytosol	91.85	91.85
KRH17349	Soybean	cytosol	91.85	91.85
EES05578	Sorghum	cytosol	91.3	91.3
AT5G37680.1	Thale cress	cytosol	91.3	91.3
TraesCS6D01G274800.1	Wheat	cytosol	91.3	91.3
TraesCS6B01G324400.2	Wheat	cytosol	91.3	91.3
TraesCS6A01G293900.1	Wheat	cytosol	91.3	91.3
HORVU6Hr1G073370.2	Barley	cytosol	90.76	90.76
Os02t0732500-01	Rice	plasma membrane	90.22	90.22
GSMUA_Achr6P23020_001	Banana	cytosol	89.67	89.67
VIT_14s0006g01090.t01	Wine grape	cytosol	78.26	87.27
Solyc03g043960.2.1	Tomato	plastid	82.07	82.07
Solyc02g064640.2.1	Tomato	extracellular	80.43	80.43
Solyc02g092330.2.1	Tomato	plastid	79.89	79.89
Zm00001d000379_P002	Maize	mitochondrion	91.3	74.34
Zm00001d017945_P002	Maize	mitochondrion	77.72	73.33
CDY01716	Canola	cytosol	80.43	65.78
CDY01715	Canola	cytosol	80.43	65.78
CDX74569	Canola	cytosol	80.43	65.49
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	33.7	32.12
Solyc01g079540.2.1	Tomato	plastid	33.15	31.61
Solyc06g009660.2.1	Tomato	extracellular	32.07	30.57
Solyc01g100350.2.1	Tomato	plastid	30.98	29.53

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4D5R1	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00173	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
EnsemblPlantsGene:Solyc11g011040.1	EnsemblPlants:Solyc11g011040.1.1	TIGRFAMs:TIGR00231	UniParc:UPI0002769913	:	:

Description

No Description!

Coordinates

chr11:-:4089589..4094356

Molecular Weight (calculated)

20654.2 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.049

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRTM WERYCRGVSA ILYVVDAADR
101: DSVPITRTEL HELLKKPSLT GIPLLILGNK IDKSEALSQQ SLVDQLGLDS ITDREVCCYM ISCKDSVNID AVIDWLIKHS KTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.