Factsheet for Solyc02g064640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008577	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	98.37	98.37
GSMUA_Achr8P30960_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	95.11	95.11
KRH58117	Soybean	endoplasmic reticulum	94.57	94.57
Solyc02g092330.2.1	Tomato	plastid	94.57	94.57
KRH28350	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.02	94.02
KRH77133	Soybean	endoplasmic reticulum	93.48	93.48
Solyc03g043960.2.1	Tomato	plastid	93.48	93.48
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	93.48	93.48
AT3G49870.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	93.48	93.48
CDY43583	Canola	cytosol	38.59	93.42
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.93	92.93
Bra012918.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.93	92.93
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.93	92.93
Bra024440.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.85	91.85
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.85	91.85
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.3	91.3
AT5G67560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.3	91.3
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.76	90.76
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.22	90.22
Bra037841.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.22	90.22
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
GSMUA_Achr1P22490_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.59	88.59
Os03t0200800-01	Rice	plasma membrane	87.5	87.5
EER92687	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.41	86.41
TraesCS4D01G260100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.41	86.41
TraesCS4B01G260300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.41	86.41
TraesCS4A01G045000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.41	86.41
Zm00001d048155_P001	Maize	extracellular	84.78	84.78
Zm00001d028112_P001	Maize	extracellular	83.15	83.15
Solyc11g011040.1.1	Tomato	plasma membrane	80.43	80.43
AT3G49860.1	Thale cress	cytosol	74.46	77.84
CDY06369	Canola	cytosol	69.57	70.33
Bra031680.1-P	Field mustard	cytosol	61.41	69.33
HORVU4Hr1G070410.2	Barley	cytosol	86.41	65.7
CDX68554	Canola	cytosol	44.02	62.79
Bra029979.1-P	Field mustard	mitochondrion	38.59	42.26
Solyc01g079540.2.1	Tomato	plastid	34.24	32.64
Solyc06g009660.2.1	Tomato	extracellular	33.15	31.61
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	32.07	30.57
Solyc01g100350.2.1	Tomato	plastid	31.52	30.05

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4B6Q0	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF293	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc02g064640.2
EnsemblPlants:Solyc02g064640.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002768837	:	:	:

Description

No Description!

Coordinates

chr2:-:35728695..35731426

Molecular Weight (calculated)

20505.9 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.064

Length

184 amino acids

Sequence
(BLAST)

001: MGLWEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADH
101: DNLSISKSEL HDLLNKTSLS GIPLLVLGNK IDKPGALSKQ ALTDEMGLNS ITDREVCCYM ISCKNSTNID SVIDWLVKHS KSKS

Best Arabidopsis Sequence Match ( AT3G49870.1 )
(BLAST)

001: MGLLEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLTS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSKN

Arabidopsis Description

ARL8AADP-ribosylation factor-like protein 8a [Source:UniProtKB/Swiss-Prot;Acc:Q8VY57]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.