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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • endoplasmic reticulum 6
  • golgi 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:golgi
Plant-mPloc:cytosol, endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
 plastid: 26371478
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g082060.1.1
Solyc03g121460.1.1
Solyc06g050570.1.1
Solyc06g073150.2.1
Solyc06g074170.2.1
Solyc07g017500.2.1
Solyc08g076530.2.1
Solyc09g011310.2.1
Solyc10g076360.1.1
Solyc10g084920.1.1
Solyc11g017300.1.1
Solyc11g068750.1.1
Solyc12g007130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09180.1 Solyc06g050570.1.1 AT2G40380.1 21798944
AT1G09180.1 Solyc02g082060.1.1 AT4G25660.1 21798944
AT1G09180.1 Solyc02g082060.1.1 AT4G25680.1 21798944
AT1G09180.1 Solyc10g076360.1.1 AT5G01640.1 21798944
AT1G09180.1 Solyc09g011310.2.1 AT5G02040.1 21798944
AT1G09180.1 Solyc10g084920.1.1 AT5G02040.1 21798944
AT1G56330.1 Solyc12g007130.1.1 AT2G20130.1 21798944
AT1G56330.1 Solyc03g121460.1.1 AT3G13710.1 21798944
AT1G56330.1 Solyc03g121460.1.1 AT3G13720.1 21798944
AT1G56330.1 Solyc07g017500.2.1 AT3G43230.1 21798944
AT1G56330.1 Solyc08g076530.2.1 AT4G17720.1 21798944
AT1G56330.1 Solyc10g076360.1.1 AT5G01640.1 21798944
AT1G56330.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G56330.1 Solyc11g068750.1.1 AT5G22290.1 21798944
AT4G02080.1 Solyc06g073150.2.1 AT1G22920.1 21798944
AT4G02080.1 Solyc11g017300.1.1 AT1G22920.1 21798944
AT4G02080.1 Solyc06g073150.2.1 AT1G71230.1 21798944
AT4G02080.1 Solyc11g017300.1.1 AT1G71230.1 21798944
AT4G02080.1 Solyc06g050570.1.1 AT2G40380.1 21798944
AT4G02080.1 Solyc03g121460.1.1 AT3G13720.1 21798944
AT4G02080.1 Solyc02g082060.1.1 AT4G25680.1 21798944
AT4G02080.1 Solyc10g076360.1.1 AT5G01640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 100.0 100.0
Solyc01g079540.2.1 Tomato plastid 95.34 95.34
Solyc06g009660.2.1 Tomato extracellular 94.3 94.3
TraesCS5A01G089200.1 Wheat golgi 94.3 94.3
AT3G62560.1 Thale cress endoplasmic reticulum 94.3 94.3
TraesCS5D01G101300.1 Wheat golgi 93.78 93.78
Bra000895.1-P Field mustard endoplasmic reticulum, extracellular 93.26 93.26
TraesCS5B01G095200.1 Wheat endoplasmic reticulum, extracellular 93.26 93.26
CDY22027 Canola endoplasmic reticulum, extracellular 93.26 93.26
CDX90955 Canola endoplasmic reticulum, extracellular 93.26 93.26
CDX91807 Canola endoplasmic reticulum, extracellular 92.75 92.75
AT4G02080.1 Thale cress endoplasmic reticulum 92.75 92.75
AT1G56330.1 Thale cress endoplasmic reticulum 92.23 92.23
KXG23692 Sorghum endoplasmic reticulum, extracellular 92.23 92.23
KRH33832 Soybean endoplasmic reticulum 92.23 92.23
KRG96730 Soybean endoplasmic reticulum 92.23 92.23
CDY65544 Canola endoplasmic reticulum, extracellular 91.19 92.15
Os12t0560300-01 Rice plasma membrane 91.71 91.71
Os01t0254000-01 Rice plasma membrane 91.71 91.71
KRH68446 Soybean endoplasmic reticulum 91.71 91.71
Bra027937.1-P Field mustard endoplasmic reticulum, extracellular 92.23 91.28
CDY41713 Canola endoplasmic reticulum, extracellular 92.23 91.28
CDY59269 Canola endoplasmic reticulum, extracellular 92.23 91.28
Os01t0338000-01 Rice plasma membrane 91.19 91.19
KRG92955 Soybean endoplasmic reticulum, extracellular 91.19 91.19
EES00709 Sorghum endoplasmic reticulum, extracellular 91.19 91.19
CDX95000 Canola endoplasmic reticulum, golgi 91.19 91.19
Zm00001d040752_P001 Maize endoplasmic reticulum, extracellular 91.19 91.19
Bra018576.1-P Field mustard endoplasmic reticulum, golgi 91.19 91.19
CDX93520 Canola endoplasmic reticulum, golgi 91.19 91.19
CDY31105 Canola endoplasmic reticulum, golgi 91.19 91.19
CDY39001 Canola endoplasmic reticulum, extracellular 91.71 90.77
Bra038169.1-P Field mustard endoplasmic reticulum, extracellular 91.71 90.77
CDY32159 Canola endoplasmic reticulum, golgi 90.67 90.67
EES02699 Sorghum endoplasmic reticulum, extracellular 90.67 90.67
TraesCS3A01G193800.1 Wheat golgi 90.67 90.67
Zm00001d040278_P001 Maize extracellular 90.67 90.67
TraesCS3B01G221700.1 Wheat endoplasmic reticulum, extracellular 90.67 90.67
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 90.16 90.16
TraesCS3D01G196200.1 Wheat endoplasmic reticulum, extracellular 90.16 90.16
TraesCS3B01G203800.1 Wheat endoplasmic reticulum 89.64 89.64
HORVU3Hr1G035000.2 Barley plasma membrane 89.64 89.64
TraesCS3A01G172900.1 Wheat golgi 89.64 89.64
AT1G09180.1 Thale cress extracellular 87.05 87.05
VIT_16s0013g00170.t01 Wine grape cytosol 48.19 86.11
TraesCS3D01G179300.1 Wheat endoplasmic reticulum, extracellular 89.64 86.07
AT1G02620.1 Thale cress endoplasmic reticulum 50.78 80.33
KXG28257 Sorghum endoplasmic reticulum 80.31 79.9
EES15193 Sorghum endoplasmic reticulum 79.79 78.97
TraesCS7B01G236300.1 Wheat cytosol 78.76 78.76
Zm00001d049068_P001 Maize cytosol 78.76 78.35
HORVU7Hr1G080190.1 Barley endoplasmic reticulum 78.24 78.24
TraesCS7D01G332100.1 Wheat endoplasmic reticulum 78.24 78.24
Os06t0225000-00 Rice endoplasmic reticulum 78.24 77.84
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 81.35 66.24
HORVU3Hr1G045150.3 Barley plastid 75.13 65.02
Zm00001d009211_P001 Maize mitochondrion 91.19 53.82
Bra036294.1-P Field mustard endoplasmic reticulum 92.75 43.87
CDY07095 Canola endoplasmic reticulum 92.75 43.77
Solyc02g064640.2.1 Tomato extracellular 30.05 31.52
Solyc03g043960.2.1 Tomato plastid 30.05 31.52
Solyc11g011040.1.1 Tomato plasma membrane 29.53 30.98
Solyc02g092330.2.1 Tomato plastid 29.53 30.98
GSMUA_Achr11P... Banana mitochondrion, plastid 35.23 27.98
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005525
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005794
GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0015031GO:GO:0016192InterPro:IPR006687
UniProt:K4B169InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711
PANTHER:PTHR11711:SF165SMART:SM00177SMART:SM00178SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SAR
InterPro:Small_GTPase_SAR1EnsemblPlantsGene:Solyc01g100350.2EnsemblPlants:Solyc01g100350.2.1TIGRFAMs:TIGR00231UniParc:UPI00005C5027SEG:seg
Description
No Description!
Coordinates
chr1:-:90412671..90415496
Molecular Weight (calculated)
22036.7 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.141
Length
193 amino acids
Sequence
(BLAST)
001: MFLVDWFYGI LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDSYDK
101: ERFAESKKEL DALLSDESLA TVPFLILGNK IDIPYAASED ELRYHLGLTG VTTGKGKVNL AESNVRPLEV FMCSIVRKMG YGEGFRWMSQ YIK
Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.