Factsheet for Solyc10g084920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060130.2.1
Solyc01g100350.2.1
Solyc06g074170.2.1
Solyc08g081730.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	Solyc01g060130.2.1	AT1G56330.1	21798944
AT5G02040.1	Solyc01g100350.2.1	AT1G56330.1	21798944
AT5G02040.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G02040.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT5G02040.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	100.0	100.0
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	90.91	90.91
KRH00054	Soybean	cytosol, peroxisome, vacuole	88.04	88.04
KRH49188	Soybean	cytosol, peroxisome, vacuole	87.56	87.56
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	85.65	85.65
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	80.38	80.38
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	79.43	79.43
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	78.47	78.47
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	78.47	78.47
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	78.47	78.47
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	78.47	78.47
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	78.47	78.47
KXG22142	Sorghum	cytosol, peroxisome, vacuole	78.47	78.47
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	77.03	77.03
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	76.56	76.56
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	76.08	76.08
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	69.38	69.38
CDX69570	Canola	endoplasmic reticulum, extracellular	23.45	69.01
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	67.46	67.46
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	67.46	67.46
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	66.99	66.99
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	66.99	66.99
Zm00001d042866_P001	Maize	cytosol	22.97	58.54
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	52.63	53.92
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	13.88	53.7
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	54.07	48.5
TraesCS3D01G357100.1	Wheat	mitochondrion	55.02	46.18
CDY16186	Canola	mitochondrion	47.37	43.04
GSMUA_Achr8P02510_001	Banana	extracellular	2.87	11.76

Protein Annotations

EnsemblPlants:Solyc10g084920.1.1	EnsemblPlantsGene:Solyc10g084920.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276A59C
UniProt:K4D3S6	MapMan:22.8.4.3.1	:	:	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:K4D3S6]

Coordinates

chr10:-:64276129..64278850

Molecular Weight (calculated)

24178.6 Da

IEP (calculated)

11.120

GRAVY (calculated)

0.267

Length

209 amino acids

Sequence
(BLAST)

001: MDWGTVTTED LIEALREVEW SSPPRPFSEF FSRFTFPRSY SKWNSRLKCN LYYYRTNYFI MIVAILALGF LRKPLAIVAA LLTALSIAFL NDSFAGTFSE
101: KVTRTVRQFS PHLAAKMRPA LTPVIRGRPS TKRAIFICGR PRWVFVFVFS IVSFFLWFVS CGLLTVLWAF GIGLLATLAH ASFRSPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.