Factsheet for Bra005704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra005951.1-P
Bra006619.1-P
Bra020182.1-P
Bra027937.1-P
Bra038169.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	Bra027937.1-P	AT1G56330.1	21798944
AT5G02040.1	Bra038169.1-P	AT1G56330.1	21798944
AT5G02040.1	Bra005951.1-P	AT5G07730.1	21798944
AT5G02040.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G02040.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G02040.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55115	Canola	cytosol, peroxisome, vacuole	100.0	100.0
CDX80799	Canola	cytosol, peroxisome, vacuole	99.04	99.04
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	85.65	85.65
KRH00054	Soybean	cytosol, peroxisome, vacuole	81.82	81.82
KRH49188	Soybean	cytosol, peroxisome, vacuole	81.82	81.82
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	81.34	81.34
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	79.9	79.9
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	79.43	79.43
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	76.56	76.56
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	76.56	76.56
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	75.12	75.12
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
KXG22142	Sorghum	cytosol, peroxisome, vacuole	75.12	75.12
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	75.12	75.12
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	74.16	74.16
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	74.16	74.16
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	73.68	73.68
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	67.94	67.94
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	66.03	66.03
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	65.07	65.07
Zm00001d042866_P001	Maize	cytosol	22.97	58.54
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	47.85	49.02
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	11.96	46.3
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	49.76	44.64
TraesCS3D01G357100.1	Wheat	mitochondrion	50.72	42.57
GSMUA_Achr8P02510_001	Banana	extracellular	3.83	15.69

Protein Annotations

EnsemblPlants:Bra005704.1	EnsemblPlants:Bra005704.1-P	EnsemblPlantsGene:Bra005704	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208	SEG:seg
TMHMM:TMhelix	UniParc:UPI000253FA38	UniProt:M4CNB6	MapMan:22.8.4.3.1	:	:

Description

AT5G02040 (E=7e-095) PRA1.A1 | PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)

Coordinates

chrA03:+:206633..207880

Molecular Weight (calculated)

23841.3 Da

IEP (calculated)

10.705

GRAVY (calculated)

0.288

Length

209 amino acids

Sequence
(BLAST)

001: MDWGNVTAED LVDALREVDW SSPPRPLSEF FSRFTVPKSL AKWDSRLKCN LYYYRTNYFI MIVFILGLGF LTRPLAILSA FLTAVTVAFL NDSFAGSFSE
101: KATRTIRRFS PQLAAKMRPP LAPVIRGRPS AKRAIYICGQ PRWVFVLISS LVSFALWYIS CGLFTVSLAL LIGLLATILH ATLRTPNLKA RLNTFREEFR
201: AVWRNYSEI

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.