CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EES00709
EES02699
EES15193
EES19841
KXG23692
KXG28257
KXG31516
KXG33320
OQU84758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	EES00709	AT1G56330.1	21798944
AT5G02040.1	EES02699	AT1G56330.1	21798944
AT5G02040.1	EES15193	AT1G56330.1	21798944
AT5G02040.1	KXG23692	AT1G56330.1	21798944
AT5G02040.1	KXG28257	AT1G56330.1	21798944
AT5G02040.1	EER89811	AT5G41600.1	21798944
AT5G02040.1	EES19841	AT5G41600.1	21798944
AT5G02040.1	KXG31516	AT5G41600.1	21798944
AT5G02040.1	KXG33320	AT5G41600.1	21798944
AT5G02040.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	90.91	90.91
KXG22142	Sorghum	cytosol, peroxisome, vacuole	90.91	90.91
CDY04976	Canola	cytosol	14.83	83.78
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	83.73	83.73
KRH00054	Soybean	cytosol, peroxisome, vacuole	81.34	81.34
KRH49188	Soybean	cytosol, peroxisome, vacuole	80.86	80.86
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	79.43	79.43
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	79.43	79.43
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	79.43	79.43
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	79.43	79.43
CDX80799	Canola	cytosol, peroxisome, vacuole	74.64	74.64
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	74.16	74.16
CDY55115	Canola	cytosol, peroxisome, vacuole	74.16	74.16
Zm00001d042866_P001	Maize	cytosol	28.71	73.17
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	72.25	72.25
CDX69570	Canola	endoplasmic reticulum, extracellular	24.4	71.83
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	69.86	69.86
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	69.38	69.38
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	68.9	68.9
CDY14095	Canola	cytosol, peroxisome, vacuole	67.94	67.94
CDY04974	Canola	cytosol, peroxisome, vacuole	67.46	67.46
CDY11345	Canola	cytosol, peroxisome, vacuole	66.99	66.99
CDX80980	Canola	cytosol, peroxisome, vacuole	66.99	66.99
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	66.99	66.99
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	66.99	66.99
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	66.51	66.51
CDY53323	Canola	plasma membrane	58.37	65.59
CDX73879	Canola	plastid	37.8	63.2
GSMUA_Achr10P...	Banana	endoplasmic reticulum, nucleus, plasma membrane	20.57	59.72
CDY01015	Canola	cytosol	69.86	50.0
CDY16186	Canola	mitochondrion	45.93	41.74

Protein Annotations

EnsemblPlants:EES03880	EnsemblPlantsGene:SORBI_3003G355900	EntrezGene:8058904	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208
ProteinID:EES03880	ProteinID:EES03880.1	RefSeq:XP_002458760.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.9089
UniParc:UPI0001A858FF	UniProt:C5XPS8	MapMan:22.8.4.3.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:67412187..67417391

Molecular Weight (calculated)

24111.7 Da

IEP (calculated)

11.114

GRAVY (calculated)

0.211

Length

209 amino acids

Sequence
(BLAST)

001: MDWSSVTAED LVDALREVDW STPPRPVSEF FSRFTAPRSY SKWTSRLKCN LYYYRTNYFI LIIFLLGMGF LRKPVAILAA LATGLSIAFL NDSFAVTFNE
101: KITRSVRQFS PHLAAKMRPP ITPVIRGRPS KRRSIHICGR PRWIFVLLFS AVSCVLWLTS CSLLTVLWAL LIGLLATLLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G05987.1 )
(BLAST)

001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Arabidopsis Description

PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.