Factsheet for PGSC0003DMT400022726

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plasma membrane 2
extracellular 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007183
PGSC0003DMT400015077
PGSC0003DMT400032086
PGSC0003DMT400050482
PGSC0003DMT400068658

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	PGSC0003DMT400007183	AT1G56330.1	21798944
AT5G02040.1	PGSC0003DMT400068658	AT1G56330.1	21798944
AT5G02040.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G02040.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT5G02040.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	99.04	99.04
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	91.87	91.87
KRH00054	Soybean	cytosol, peroxisome, vacuole	90.91	90.91
KRH49188	Soybean	cytosol, peroxisome, vacuole	90.43	90.43
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	88.04	88.04
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	80.86	80.86
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	79.9	79.9
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	79.9	79.9
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	79.9	79.9
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	79.9	79.9
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	79.43	79.43
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	79.43	79.43
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	79.43	79.43
KXG22142	Sorghum	cytosol, peroxisome, vacuole	79.43	79.43
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	77.99	77.99
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	77.99	77.99
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	70.81	70.81
CDX69570	Canola	endoplasmic reticulum, extracellular	23.92	70.42
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	69.38	69.38
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	68.42	68.42
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	67.46	67.46
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	67.46	67.46
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	14.35	55.56
Zm00001d042866_P001	Maize	cytosol	21.53	54.88
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	52.63	53.92
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	54.07	48.5
TraesCS3D01G357100.1	Wheat	mitochondrion	55.02	46.18
CDY16186	Canola	mitochondrion	50.24	45.65
GSMUA_Achr8P02510_001	Banana	extracellular	2.39	9.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400022726	EnsemblPlantsGene:PGSC0003DMG400008814	EntrezGene:102592288	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208	PGSC:PGSC0003DMG400008814	RefSeq:XP_006340991.1
RefSeq:XP_015161382.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294A669	UniProt:M1AH44	MapMan:22.8.4.3.1

Description

Prenylated rab acceptor family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008814]

Coordinates

chr9:+:1282266..1289115

Molecular Weight (calculated)

24102.5 Da

IEP (calculated)

11.384

GRAVY (calculated)

0.229

Length

209 amino acids

Sequence
(BLAST)

001: MDWGTVTTED LIEALREVDW SSPPRPPSEF FSRFTFPRSS SKWNSRVKCN LYYYRTNYFI MIVAILALGF LRRPLAIVAA FLTTLSIAFL NDSFAGTFSE
101: KVTRTVRQFS PHLAAKMRPP LTPVIRGRPS AKRAIFICGR PRWVFVLVFS LASFFLWFVS CGLLTVLWAL AIGLLSTLLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.