Factsheet for TraesCS3B01G395800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, peroxisome, vacuole
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G346800.3
TraesCS1B01G360800.1
TraesCS1D01G349700.1
TraesCS3A01G151200.1
TraesCS3A01G172900.1
TraesCS3A01G193800.1
TraesCS3A01G278800.1
TraesCS3B01G178100.1
TraesCS3B01G203800.1
TraesCS3B01G221700.1
TraesCS3B01G313000.1
TraesCS3D01G159100.1
TraesCS3D01G179300.1
TraesCS3D01G196200.1
TraesCS3D01G279100.1
TraesCS5A01G089200.1
TraesCS5B01G095200.1
TraesCS5D01G101300.1
TraesCS7A01G341800.1
TraesCS7B01G236300.1
TraesCS7B01G241100.1
TraesCS7D01G332100.1
TraesCS7D01G337800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	TraesCS3A01G172900.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3A01G193800.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3B01G203800.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3B01G221700.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3D01G179300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3D01G196200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5A01G089200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5B01G095200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5D01G101300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS7B01G236300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS7D01G332100.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT5G02040.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	89.71	78.54
TraesCS3D01G357100.1	Wheat	mitochondrion	92.16	75.5
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	19.61	74.07
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	56.86	55.5
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	55.88	54.55
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	53.92	52.63
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	53.92	52.63
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	53.92	52.63
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	53.92	52.63
KRH00054	Soybean	cytosol, peroxisome, vacuole	52.94	51.67
KRH49188	Soybean	cytosol, peroxisome, vacuole	52.45	51.2
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	49.51	48.33
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	49.02	47.85
CDY55115	Canola	cytosol, peroxisome, vacuole	49.02	47.85
CDX80799	Canola	cytosol, peroxisome, vacuole	49.02	47.85
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	48.04	46.89
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	47.55	46.41
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	47.06	45.93
CDY14095	Canola	cytosol, peroxisome, vacuole	47.06	45.93
CDX80980	Canola	cytosol, peroxisome, vacuole	46.57	45.45
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	46.57	45.45
CDY04974	Canola	cytosol, peroxisome, vacuole	46.57	45.45
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	46.08	44.98
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	46.08	44.98
CDY11345	Canola	cytosol, peroxisome, vacuole	46.08	44.98
CDY53323	Canola	plasma membrane	39.22	43.01
GSMUA_Achr8P02500_001	Banana	extracellular, golgi, peroxisome	20.1	38.68
CDX69570	Canola	endoplasmic reticulum, extracellular	13.24	38.03
CDY04976	Canola	cytosol	6.86	37.84
CDX73879	Canola	plastid	21.57	35.2
CDY01015	Canola	cytosol	47.55	33.22
CDY16186	Canola	mitochondrion	29.9	26.52

Protein Annotations

EnsemblPlants:TraesCS3B01G395800.1	EnsemblPlantsGene:TraesCS3B01G395800	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208
SEG:seg	TMHMM:TMhelix	MapMan:22.8.4.3.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:623662075..623663857

Molecular Weight (calculated)

23386.7 Da

IEP (calculated)

10.066

GRAVY (calculated)

0.237

Length

204 amino acids

Sequence
(BLAST)

001: MDGRPVTADD VVEAMREFVW LRPPRPSSEF FSRFSAPRSC SKWISRLECN LYYYGTNYFI LIILIGMSFL QKPVTIITAF ATGLSIAFIS DSFAVTSTDK
101: VISIVRKFSP DLAAKMRPYM NPFLHGRPSI KGSTHICGRP LSMWVIALFL FEVSCIFWAS SCNFLIVPWA LYVGVLVTLI HASFRERNLK GRFNRSRKEC
201: REAW

Best Arabidopsis Sequence Match ( AT5G05987.1 )
(BLAST)

001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Arabidopsis Description

PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.