CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78308
CDX81068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11397.1	CDX78308	AT5G07730.1	21798944
AT3G11397.1	CDX81068	AT5G07730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04976	Canola	cytosol	24.0	81.08
CDX69570	Canola	endoplasmic reticulum, extracellular	35.2	61.97
CDY53323	Canola	plasma membrane	88.8	59.68
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	87.2	52.15
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	85.6	51.2
CDY11345	Canola	cytosol, peroxisome, vacuole	78.4	46.89
CDX80980	Canola	cytosol, peroxisome, vacuole	77.6	46.41
CDY04974	Canola	cytosol, peroxisome, vacuole	76.8	45.93
CDY14095	Canola	cytosol, peroxisome, vacuole	76.8	45.93
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	19.2	44.44
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	63.2	37.8
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	63.2	37.8
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	63.2	37.8
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	63.2	37.8
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	63.2	37.8
CDY55115	Canola	cytosol, peroxisome, vacuole	63.2	37.8
CDX80799	Canola	cytosol, peroxisome, vacuole	63.2	37.8
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	62.4	37.32
CDY01015	Canola	cytosol	86.4	36.99
KXG22142	Sorghum	cytosol, peroxisome, vacuole	61.6	36.84
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	60.8	36.36
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	60.8	36.36
CDY16186	Canola	mitochondrion	63.2	34.35
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	35.2	21.57
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	37.6	20.17
TraesCS3D01G357100.1	Wheat	mitochondrion	39.2	19.68
Zm00001d042866_P001	Maize	cytosol	1.6	2.44

Protein Annotations

EnsemblPlants:CDX73879	EnsemblPlantsGene:GSBRNA2T00111596001	GO:A0A078CCE2	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0
PFAM:PF03208	ProteinID:CDX73879	ProteinID:CDX73879.1	TMHMM:TMhelix	UniParc:UPI0004EE95AB	MapMan:22.8.4.3.1

Description

BnaA03g31680D

Coordinates

chrLK031800:-:370557..371185

Molecular Weight (calculated)

14533.2 Da

IEP (calculated)

11.915

GRAVY (calculated)

0.322

Length

125 amino acids

Sequence
(BLAST)

001: MKFMLSFASF AATFNEKMIR TIRHFSPHLA AKMRPPHMPV IRGRSAARKK VYVCGQPRLV FVFLGLTASF VLWFTSCGLL WVFYAFATAL LMIILHASLR
101: TPNLKARLNT FREEFRAVWR NYSEL

Best Arabidopsis Sequence Match ( AT3G11397.1 )
(BLAST)

001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Arabidopsis Description

PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [plasma membrane,endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.