Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11397.1 | CDX78308 | AT5G07730.1 | 21798944 |
| AT3G11397.1 | CDX81068 | AT5G07730.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73879 | Canola | plastid | 59.68 | 88.8 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 89.78 | 79.9 |
| CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 89.78 | 79.9 |
| CDY04976 | Canola | cytosol | 15.59 | 78.38 |
| CDY11345 | Canola | cytosol, peroxisome, vacuole | 83.33 | 74.16 |
| CDX80980 | Canola | cytosol, peroxisome, vacuole | 82.8 | 73.68 |
| CDY14095 | Canola | cytosol, peroxisome, vacuole | 80.65 | 71.77 |
| CDY04974 | Canola | cytosol, peroxisome, vacuole | 80.11 | 71.29 |
| CDX69570 | Canola | endoplasmic reticulum, extracellular | 23.12 | 60.56 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 65.59 | 58.37 |
| CDY55115 | Canola | cytosol, peroxisome, vacuole | 64.52 | 57.42 |
| CDX80799 | Canola | cytosol, peroxisome, vacuole | 64.52 | 57.42 |
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 63.98 | 56.94 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 63.98 | 56.94 |
| TraesCS1B01G290700.1 | Wheat | cytosol, peroxisome, vacuole | 63.98 | 56.94 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 63.98 | 56.94 |
| CDY01015 | Canola | cytosol | 88.71 | 56.51 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 63.44 | 56.46 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 63.44 | 56.46 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 63.44 | 56.46 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 62.37 | 55.5 |
| HORVU3Hr1G085790.1 | Barley | extracellular, plasma membrane | 12.37 | 42.59 |
| Zm00001d042866_P001 | Maize | cytosol | 17.74 | 40.24 |
| TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 43.01 | 39.22 |
| CDY16186 | Canola | mitochondrion | 45.16 | 36.52 |
| TraesCS3A01G363600.1 | Wheat | cytosol, peroxisome, vacuole | 45.7 | 36.48 |
| TraesCS3D01G357100.1 | Wheat | mitochondrion | 46.24 | 34.54 |
Protein Annotations
| EnsemblPlants:CDY53323 | EnsemblPlantsGene:GSBRNA2T00010443001 | GO:A0A078IWG0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 | ProteinID:CDY53323 | ProteinID:CDY53323.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB2086 | UniProt:A0A078IWG0 | MapMan:22.8.4.3.1 | : |
Description
BnaCnng24850DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWG0]
Coordinates
chrLK033187:-:55066..56863
Molecular Weight (calculated)
21376.7 Da
IEP (calculated)
11.165
GRAVY (calculated)
0.404
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDESSFFSR LAFPRSFSKW MSRLKCNLYY YRTNYFTLLI LVLGLALITR PLAILGAALT ALSLAFLNDS FAATFNEKMI RTIRHFSPHL AAKMRPPHMP
101: VIRGRSAARK KVYVCGQPRL VFVLLGLTAS FVLWFASCGL LWVLYAFATA LIMILLHASL RTPNLKARLN TYREEFRAVW RNYSEL
101: VIRGRSAARK KVYVCGQPRL VFVLLGLTAS FVLWFASCGL LWVLYAFATA LIMILLHASL RTPNLKARLN TYREEFRAVW RNYSEL
001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.