Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, nucleus, plasma membrane | 35.37 | 40.28 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 73.17 | 28.71 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 68.29 | 26.79 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 64.63 | 25.36 |
| VIT_08s0007g01140.t01 | Wine grape | cytosol, peroxisome, vacuole | 62.2 | 24.4 |
| KRH49188 | Soybean | cytosol, peroxisome, vacuole | 59.76 | 23.45 |
| KRH00054 | Soybean | cytosol, peroxisome, vacuole | 59.76 | 23.45 |
| Bra005704.1-P | Field mustard | cytosol, peroxisome, vacuole | 58.54 | 22.97 |
| Solyc10g084920.1.1 | Tomato | cytosol, peroxisome, vacuole | 58.54 | 22.97 |
| PGSC0003DMT400028790 | Potato | cytosol, peroxisome, vacuole | 58.54 | 22.97 |
| CDX80799 | Canola | cytosol, peroxisome, vacuole | 58.54 | 22.97 |
| CDY55115 | Canola | cytosol, peroxisome, vacuole | 58.54 | 22.97 |
| AT5G02040.1 | Thale cress | cytosol, peroxisome, vacuole | 56.1 | 22.01 |
| Solyc09g011310.2.1 | Tomato | endoplasmic reticulum, peroxisome, vacuole | 54.88 | 21.53 |
| PGSC0003DMT400022726 | Potato | endoplasmic reticulum, peroxisome, vacuole | 54.88 | 21.53 |
| CDY11345 | Canola | cytosol, peroxisome, vacuole | 53.66 | 21.05 |
| Bra005872.1-P | Field mustard | cytosol, peroxisome, vacuole | 53.66 | 21.05 |
| CDX80980 | Canola | cytosol, peroxisome, vacuole | 53.66 | 21.05 |
| CDY14095 | Canola | cytosol, peroxisome, vacuole | 52.44 | 20.57 |
| AT5G05987.1 | Thale cress | cytosol, peroxisome, vacuole | 52.44 | 20.57 |
| CDY04974 | Canola | cytosol, peroxisome, vacuole | 52.44 | 20.57 |
| CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 51.22 | 20.1 |
| Bra028745.1-P | Field mustard | cytosol, peroxisome, vacuole | 51.22 | 20.1 |
| Bra034847.1-P | Field mustard | cytosol, peroxisome, vacuole | 51.22 | 20.1 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 50.0 | 19.62 |
| CDY53323 | Canola | plasma membrane | 40.24 | 17.74 |
| CDY01015 | Canola | cytosol | 50.0 | 14.04 |
| CDX69570 | Canola | endoplasmic reticulum, extracellular | 4.88 | 5.63 |
| CDY04976 | Canola | cytosol | 2.44 | 5.41 |
| CDY16186 | Canola | mitochondrion | 9.76 | 3.48 |
| CDX73879 | Canola | plastid | 2.44 | 1.6 |
Protein Annotations
| EnsemblPlants:Zm00001d042866_P001 | EnsemblPlants:Zm00001d042866_T001 | EnsemblPlantsGene:Zm00001d042866 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 | ProteinID:ONM36424.1 | TMHMM:TMhelix |
| UniParc:UPI0002216FFF | UniProt:A0A1D6N759 | MapMan:22.8.4.3.1 | : | : | : |
Description
PRA1 family protein A1
Coordinates
chr3:+:182480182..182484139
Molecular Weight (calculated)
9662.6 Da
IEP (calculated)
8.468
GRAVY (calculated)
-0.052
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MDTLREVDWS TPSCPISEFF SRFTTPESYT KWTRHLKCNL YYYRTNYYIL VIFVLGMGFL RKPVAILAAL ASSNWPQHCV SE
001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
Arabidopsis Description
PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.