CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69570	Canola	endoplasmic reticulum, extracellular	26.96	87.32
CDY04976	Canola	cytosol	13.04	81.08
CDX73879	Canola	plastid	34.35	63.2
CDY55115	Canola	cytosol, peroxisome, vacuole	56.52	62.2
CDX80799	Canola	cytosol, peroxisome, vacuole	55.65	61.24
KRH49188	Soybean	cytosol, peroxisome, vacuole	46.52	51.2
KRH00054	Soybean	cytosol, peroxisome, vacuole	46.52	51.2
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	46.09	50.72
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	45.65	50.24
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	43.04	47.37
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	43.04	47.37
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	42.17	46.41
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	42.17	46.41
KXG22142	Sorghum	cytosol, peroxisome, vacuole	42.17	46.41
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	42.17	46.41
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	42.17	46.41
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	42.17	46.41
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	10.87	46.3
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	41.74	45.93
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	41.74	45.93
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	41.3	45.45
CDY53323	Canola	plasma membrane	36.52	45.16
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	40.0	44.02
CDY11345	Canola	cytosol, peroxisome, vacuole	39.13	43.06
CDX80980	Canola	cytosol, peroxisome, vacuole	39.13	43.06
CDY04974	Canola	cytosol, peroxisome, vacuole	38.7	42.58
CDY14095	Canola	cytosol, peroxisome, vacuole	38.7	42.58
CDY01015	Canola	cytosol	40.87	32.19
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	26.52	29.9
TraesCS3D01G357100.1	Wheat	mitochondrion	29.57	27.31
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	26.96	26.61
Zm00001d042866_P001	Maize	cytosol	3.48	9.76

Protein Annotations

MapMan:22.8.4.3.1	GO:A0A078FSX5	UniProt:A0A078FSX5	EnsemblPlants:CDY16186	ProteinID:CDY16186	ProteinID:CDY16186.1
GO:GO:0005575	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00090629001	PFAM:PF03208	PANTHER:PTHR12859
PANTHER:PTHR12859:SF0	InterPro:Prenylated_rab_accept_PRA1	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	TMHMM:TMhelix	UniParc:UPI0004EE2118
SEG:seg	:	:	:	:	:

Description

BnaA09g29200DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSX5]

Coordinates

chrLK032061:-:344602..346940

Molecular Weight (calculated)

25615.6 Da

IEP (calculated)

11.745

GRAVY (calculated)

0.035

Length

230 amino acids

Sequence
(BLAST)

001: MALRLASLKR AAAESCRIFE TRSFSNVAAM PSPFNSVIDR PIGTPPLISP EFDQNQSQPG SIDENRFGFG FPSFAFSGSM DLMAVPKKKV SKHKRGIRNG
101: PKALKPIPLI IRCSFAGSFS EKATRTIRRF SPQLAAKMRP PLAPVIRGRP SAKRAIYICG QPRWVFVLIS SLVSFALWYI SCGLFTVSLA LLIGLLATIL
201: HATLRTPNLK ARLNTFREEF RAVWRNYSEI

Best Arabidopsis Sequence Match ( AT1G26740.1 )
(BLAST)

001: MALRLTSLKR AAVESCRILE TRSLSHVAAM PSPLNGAFDR PISMPPLVLP EFDQNQPGLI EEKSFGFGLP SFAFNGSMEL MAVPKKKISK HKRGIRNGPK
101: ALKPVPVIIR CRSCGRVKLP HFFCCSGERL NPTE

Arabidopsis Description

At1g26740/T24P13_11 [Source:UniProtKB/TrEMBL;Acc:Q944L5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.