Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 100.0 | 100.0 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 100.0 | 100.0 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 100.0 | 100.0 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 96.17 | 96.17 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 95.69 | 95.69 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 94.26 | 94.26 |
| CDY04976 | Canola | cytosol | 14.83 | 83.78 |
| VIT_08s0007g01140.t01 | Wine grape | cytosol, peroxisome, vacuole | 82.78 | 82.78 |
| KRH00054 | Soybean | cytosol, peroxisome, vacuole | 80.86 | 80.86 |
| KRH49188 | Soybean | cytosol, peroxisome, vacuole | 80.38 | 80.38 |
| Solyc09g011310.2.1 | Tomato | endoplasmic reticulum, peroxisome, vacuole | 79.9 | 79.9 |
| PGSC0003DMT400022726 | Potato | endoplasmic reticulum, peroxisome, vacuole | 79.9 | 79.9 |
| Solyc10g084920.1.1 | Tomato | cytosol, peroxisome, vacuole | 78.47 | 78.47 |
| PGSC0003DMT400028790 | Potato | cytosol, peroxisome, vacuole | 78.47 | 78.47 |
| CDY55115 | Canola | cytosol, peroxisome, vacuole | 75.12 | 75.12 |
| CDX80799 | Canola | cytosol, peroxisome, vacuole | 75.12 | 75.12 |
| Bra005704.1-P | Field mustard | cytosol, peroxisome, vacuole | 75.12 | 75.12 |
| AT5G02040.1 | Thale cress | cytosol, peroxisome, vacuole | 73.21 | 73.21 |
| CDX69570 | Canola | endoplasmic reticulum, extracellular | 23.45 | 69.01 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 68.9 | 68.9 |
| Bra034847.1-P | Field mustard | cytosol, peroxisome, vacuole | 68.9 | 68.9 |
| CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 68.42 | 68.42 |
| CDY14095 | Canola | cytosol, peroxisome, vacuole | 67.46 | 67.46 |
| CDY04974 | Canola | cytosol, peroxisome, vacuole | 66.51 | 66.51 |
| CDX80980 | Canola | cytosol, peroxisome, vacuole | 66.03 | 66.03 |
| AT5G05987.1 | Thale cress | cytosol, peroxisome, vacuole | 66.03 | 66.03 |
| Bra005872.1-P | Field mustard | cytosol, peroxisome, vacuole | 66.03 | 66.03 |
| CDY11345 | Canola | cytosol, peroxisome, vacuole | 66.03 | 66.03 |
| Bra028745.1-P | Field mustard | cytosol, peroxisome, vacuole | 65.55 | 65.55 |
| CDY53323 | Canola | plasma membrane | 56.94 | 63.98 |
| CDX73879 | Canola | plastid | 37.8 | 63.2 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, nucleus, plasma membrane | 20.57 | 59.72 |
| TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 55.5 | 56.86 |
| CDY01015 | Canola | cytosol | 69.86 | 50.0 |
| CDY16186 | Canola | mitochondrion | 46.41 | 42.17 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G290700.1 | EnsemblPlantsGene:TraesCS1B01G290700 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:508390885..508394967
Molecular Weight (calculated)
24240.9 Da
IEP (calculated)
10.972
GRAVY (calculated)
0.268
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWSAVTAED LVAALREVDW STPPRPVPEF FSRFTVPRSY SKWTSRLKCN LYYYRTNYFI LIMFILGLGF LWKPVAILAA FMTGFSIAFL NDSFAVTFNE
101: KVTRTVRQFS PHLAAKMRPP ITPVIRGRPS SKRSIHICGR PRWLFVLLFS AVSCMLWLTS CSLLTVLWAL LIALLTTVLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KVTRTVRQFS PHLAAKMRPP ITPVIRGRPS SKRSIHICGR PRWLFVLLFS AVSCMLWLTS CSLLTVLWAL LIALLTTVLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL
001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
Arabidopsis Description
PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.