Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11397.1 | CDX78308 | AT5G07730.1 | 21798944 |
| AT3G11397.1 | CDX81068 | AT5G07730.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 69.86 | 97.61 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 67.12 | 93.78 |
| CDY53323 | Canola | plasma membrane | 56.51 | 88.71 |
| CDY04976 | Canola | cytosol | 10.96 | 86.49 |
| CDX73879 | Canola | plastid | 36.99 | 86.4 |
| CDY14095 | Canola | cytosol, peroxisome, vacuole | 60.96 | 85.17 |
| CDY04974 | Canola | cytosol, peroxisome, vacuole | 60.62 | 84.69 |
| CDY11345 | Canola | cytosol, peroxisome, vacuole | 60.62 | 84.69 |
| CDX80980 | Canola | cytosol, peroxisome, vacuole | 59.93 | 83.73 |
| TraesCS1B01G290700.1 | Wheat | cytosol, peroxisome, vacuole | 50.0 | 69.86 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 50.0 | 69.86 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 50.0 | 69.86 |
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 50.0 | 69.86 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 50.0 | 69.86 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 49.32 | 68.9 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 49.32 | 68.9 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 48.97 | 68.42 |
| CDX80799 | Canola | cytosol, peroxisome, vacuole | 48.97 | 68.42 |
| CDY55115 | Canola | cytosol, peroxisome, vacuole | 48.63 | 67.94 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 48.63 | 67.94 |
| CDX69570 | Canola | endoplasmic reticulum, extracellular | 15.75 | 64.79 |
| Zm00001d042866_P001 | Maize | cytosol | 14.04 | 50.0 |
| TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 33.22 | 47.55 |
| HORVU3Hr1G085790.1 | Barley | extracellular, plasma membrane | 8.56 | 46.3 |
| TraesCS3A01G363600.1 | Wheat | cytosol, peroxisome, vacuole | 33.9 | 42.49 |
| CDY16186 | Canola | mitochondrion | 32.19 | 40.87 |
| TraesCS3D01G357100.1 | Wheat | mitochondrion | 34.59 | 40.56 |
Protein Annotations
| EnsemblPlants:CDY01015 | EnsemblPlantsGene:GSBRNA2T00111038001 | GO:A0A078EG21 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 |
| PFAM:PF03208 | ProteinID:CDY01015 | ProteinID:CDY01015.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE2AD6 |
| MapMan:22.8.4.3.1 | : | : | : | : | : |
Description
BnaC05g41850D
Coordinates
chrLK031923:+:656909..659301
Molecular Weight (calculated)
32140.7 Da
IEP (calculated)
10.540
GRAVY (calculated)
0.523
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDSVAAGD VVEALREVEW STSPRSVAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LLVFVLGLAL ITRPLAIIGA ALTALSLAFL NDSFAATFNE
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL ATALLLFFSL SLSLSLHSSY SDLSSSCVXX
201: XXXXXPVIRG RSASRKTVYV CGQPRLVFVL LGLTASFVLW FTSCGLLWVL YALATALLLI MLHASLRTPN LKARLNTFRE EFRAVWRNYS EL
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL ATALLLFFSL SLSLSLHSSY SDLSSSCVXX
201: XXXXXPVIRG RSASRKTVYV CGQPRLVFVL LGLTASFVLW FTSCGLLWVL YALATALLLI MLHASLRTPN LKARLNTFRE EFRAVWRNYS EL
001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.