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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, vacuole
Any Predictor:cytosol, nucleus, peroxisome, vacuole
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:vacuole
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11345 Canola cytosol, peroxisome, vacuole 98.56 98.56
AT5G05987.1 Thale cress cytosol, peroxisome, vacuole 93.3 93.3
CDY14095 Canola cytosol, peroxisome, vacuole 93.3 93.3
CDY04974 Canola cytosol, peroxisome, vacuole 92.34 92.34
CDY04976 Canola cytosol 16.27 91.89
CDY08532 Canola endoplasmic reticulum, peroxisome, vacuole 83.73 83.73
CDY53323 Canola plasma membrane 73.68 82.8
CDX73879 Canola plastid 46.41 77.6
EES03880 Sorghum cytosol, peroxisome, plasma membrane 66.99 66.99
TraesCS1B01G290700.1 Wheat cytosol, peroxisome, vacuole 66.03 66.03
TraesCS1A01G281600.1 Wheat cytosol, peroxisome, vacuole 66.03 66.03
KXG22142 Sorghum cytosol, peroxisome, vacuole 66.03 66.03
TraesCS1D01G280800.1 Wheat cytosol, peroxisome, vacuole 66.03 66.03
HORVU1Hr1G072730.1 Barley cytosol, peroxisome, vacuole 66.03 66.03
CDY55115 Canola cytosol, peroxisome, vacuole 66.03 66.03
Os01t0847900-01 Rice cytosol, peroxisome, plasma membrane 65.55 65.55
CDX80799 Canola cytosol, peroxisome, vacuole 65.55 65.55
Os05t0455600-01 Rice cytosol, peroxisome, vacuole 65.07 65.07
Zm00001d010055_P003 Maize cytosol, peroxisome, vacuole 64.59 64.59
CDY01015 Canola cytosol 83.73 59.93
CDX69570 Canola endoplasmic reticulum, extracellular 20.1 59.15
Zm00001d042866_P001 Maize cytosol 21.05 53.66
HORVU3Hr1G085790.1 Barley extracellular, plasma membrane 12.44 48.15
TraesCS3B01G395800.1 Wheat cytosol, peroxisome, vacuole 45.45 46.57
TraesCS3A01G363600.1 Wheat cytosol, peroxisome, vacuole 47.85 42.92
TraesCS3D01G357100.1 Wheat mitochondrion 48.33 40.56
CDY16186 Canola mitochondrion 43.06 39.13
Protein Annotations
EnsemblPlants:CDX80980EnsemblPlantsGene:GSBRNA2T00134409001GO:A0A078CVU3InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR12859PANTHER:PTHR12859:SF0
PFAM:PF03208ProteinID:CDX80980ProteinID:CDX80980.1SEG:segTMHMM:TMhelixUniParc:UPI0004EDB72B
MapMan:22.8.4.3.1:::::
Description
BnaC03g02340D
Coordinates
chrLK031823:+:1131112..1133094
Molecular Weight (calculated)
24228.7 Da
IEP (calculated)
10.776
GRAVY (calculated)
0.291
Length
209 amino acids
Sequence
(BLAST)
001: MDWENVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVILVLGLAL ITRPLAILGA AFTALSLAFL NDSFAASFNE
101: KFIRTIRFFS PHLAAKMRPP HMPVIRGRSA ARKTVYVCGK PRWVFVVTFL TTSLVMWFSS CGLLWVLYAF LTSLAVIIVH ASVRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Best Arabidopsis Sequence Match ( AT5G05987.1 )
(BLAST)
001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.