Factsheet for TraesCS3D01G357100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G346800.3
TraesCS1B01G360800.1
TraesCS1D01G349700.1
TraesCS3A01G151200.1
TraesCS3A01G172900.1
TraesCS3A01G193800.1
TraesCS3A01G278800.1
TraesCS3B01G178100.1
TraesCS3B01G203800.1
TraesCS3B01G221700.1
TraesCS3B01G313000.1
TraesCS3D01G159100.1
TraesCS3D01G179300.1
TraesCS3D01G196200.1
TraesCS3D01G279100.1
TraesCS5A01G089200.1
TraesCS5B01G095200.1
TraesCS5D01G101300.1
TraesCS7A01G341800.1
TraesCS7B01G236300.1
TraesCS7B01G241100.1
TraesCS7D01G332100.1
TraesCS7D01G337800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	TraesCS3A01G172900.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3A01G193800.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3B01G203800.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3B01G221700.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3D01G179300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS3D01G196200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5A01G089200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5B01G095200.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS5D01G101300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS7B01G236300.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS7D01G332100.1	AT1G56330.1	21798944
AT5G02040.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT5G02040.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT5G02040.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	75.5	92.16
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	79.12	84.55
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	18.07	83.33
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	49.4	58.85
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	47.79	56.94
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	46.18	55.02
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	46.18	55.02
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	46.18	55.02
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	46.18	55.02
KRH00054	Soybean	cytosol, peroxisome, vacuole	45.38	54.07
KRH49188	Soybean	cytosol, peroxisome, vacuole	44.98	53.59
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	42.57	50.72
CDX80799	Canola	cytosol, peroxisome, vacuole	42.57	50.72
CDY55115	Canola	cytosol, peroxisome, vacuole	42.57	50.72
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	41.37	49.28
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	40.96	48.8
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	40.96	48.8
CDY14095	Canola	cytosol, peroxisome, vacuole	40.56	48.33
CDX80980	Canola	cytosol, peroxisome, vacuole	40.56	48.33
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	40.56	48.33
CDY04974	Canola	cytosol, peroxisome, vacuole	40.16	47.85
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	40.16	47.85
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	40.16	47.85
CDY11345	Canola	cytosol, peroxisome, vacuole	40.16	47.85
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	39.76	47.37
CDY53323	Canola	plasma membrane	34.54	46.24
CDY04976	Canola	cytosol	6.83	45.95
CDX69570	Canola	endoplasmic reticulum, extracellular	12.45	43.66
CDX73879	Canola	plastid	19.68	39.2
GSMUA_Achr8P02500_001	Banana	extracellular, golgi, peroxisome	16.06	37.74
CDY01015	Canola	cytosol	40.56	34.59
CDY16186	Canola	mitochondrion	27.31	29.57

Protein Annotations

EnsemblPlants:TraesCS3D01G357100.1	EnsemblPlantsGene:TraesCS3D01G357100	InterPro:Prenylated_rab_accept_PRA1	ncoils:Coil	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0
PFAM:PF03208	SEG:seg	TMHMM:TMhelix	MapMan:22.8.4.3.1	:	:

Description

No Description!

Coordinates

chr3D:-:469380780..469383112

Molecular Weight (calculated)

28451.7 Da

IEP (calculated)

11.051

GRAVY (calculated)

0.082

Length

249 amino acids

Sequence
(BLAST)

001: MDRTAKFACR QTRVLFQNQT GVRSPNLNQA FPLGSGLRGR RRAAAMDGRP ATADDVVEAM REFVWFPPPR PSSEFFSRFS APRSCSKWIS RLECNLYYYG
101: TNYFILIILI GMSFLQKPVA ILTAFATGLS IAFFSDSFAV TSTDKVISIV RKFSPDLAAK MRPYINSVRH GRPSIKGSTH ICGRPLSMWV FALFLFEVSC
201: IFWVSSCNFL IVPWALYVGL LVTLIHASFR ERNLKGRLNR FRKEFREAW

Best Arabidopsis Sequence Match ( AT5G05987.1 )
(BLAST)

001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Arabidopsis Description

PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.