Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 2
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005951.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11397.1 | Bra005951.1-P | AT5G07730.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 99.04 | 99.04 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 93.3 | 93.3 |
| Bra005872.1-P | Field mustard | cytosol, peroxisome, vacuole | 85.17 | 85.17 |
| Bra028745.1-P | Field mustard | cytosol, peroxisome, vacuole | 83.73 | 83.73 |
| KRH00054 | Soybean | cytosol, peroxisome, vacuole | 71.77 | 71.77 |
| KRH49188 | Soybean | cytosol, peroxisome, vacuole | 71.29 | 71.29 |
| Solyc09g011310.2.1 | Tomato | endoplasmic reticulum, peroxisome, vacuole | 69.86 | 69.86 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 69.38 | 69.38 |
| PGSC0003DMT400022726 | Potato | endoplasmic reticulum, peroxisome, vacuole | 69.38 | 69.38 |
| TraesCS1B01G290700.1 | Wheat | cytosol, peroxisome, vacuole | 68.9 | 68.9 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 68.9 | 68.9 |
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 68.9 | 68.9 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 68.9 | 68.9 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 67.94 | 67.94 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 67.94 | 67.94 |
| Bra005704.1-P | Field mustard | cytosol, peroxisome, vacuole | 67.94 | 67.94 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 67.46 | 67.46 |
| Solyc10g084920.1.1 | Tomato | cytosol, peroxisome, vacuole | 66.99 | 66.99 |
| PGSC0003DMT400028790 | Potato | cytosol, peroxisome, vacuole | 66.99 | 66.99 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 66.99 | 66.99 |
| Zm00001d042866_P001 | Maize | cytosol | 20.1 | 51.22 |
| TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 46.89 | 48.04 |
| HORVU3Hr1G085790.1 | Barley | extracellular, plasma membrane | 11.96 | 46.3 |
| TraesCS3A01G363600.1 | Wheat | cytosol, peroxisome, vacuole | 47.85 | 42.92 |
| TraesCS3D01G357100.1 | Wheat | mitochondrion | 48.8 | 40.96 |
| GSMUA_Achr8P02510_001 | Banana | extracellular | 3.35 | 13.73 |
Protein Annotations
| MapMan:22.8.4.3.1 | EnsemblPlantsGene:Bra034847 | EnsemblPlants:Bra034847.1 | EnsemblPlants:Bra034847.1-P | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | UniProt:M4F1A1 | PFAM:PF03208 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 |
| InterPro:Prenylated_rab_accept_PRA1 | TMHMM:TMhelix | UniParc:UPI0002547643 | SEG:seg | : | : |
Description
AT3G11397 (E=2e-103) PRA1.A3 | PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)
Coordinates
chrA05:-:21701068..21702455
Molecular Weight (calculated)
23866.4 Da
IEP (calculated)
10.772
GRAVY (calculated)
0.376
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDSVAAGD VVEALREVEW STSPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LLIFVLGLAL ITRPLAIIGA ALTALSLAFL NDSFAATFNE
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFAS CGLLWVLYAL ATALLLIMLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFAS CGLLWVLYAL ATALLLIMLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [plasma membrane,endoplasmic reticulum,peroxisome]
SUBAcon: [plasma membrane,endoplasmic reticulum,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.