Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 78.54 | 89.71 |
HORVU3Hr1G085790.1 | Barley | extracellular, plasma membrane | 18.88 | 81.48 |
TraesCS3D01G357100.1 | Wheat | mitochondrion | 84.55 | 79.12 |
TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 51.93 | 57.89 |
VIT_08s0007g01140.t01 | Wine grape | cytosol, peroxisome, vacuole | 50.21 | 55.98 |
Solyc10g084920.1.1 | Tomato | cytosol, peroxisome, vacuole | 48.5 | 54.07 |
Solyc09g011310.2.1 | Tomato | endoplasmic reticulum, peroxisome, vacuole | 48.5 | 54.07 |
PGSC0003DMT400028790 | Potato | cytosol, peroxisome, vacuole | 48.5 | 54.07 |
PGSC0003DMT400022726 | Potato | endoplasmic reticulum, peroxisome, vacuole | 48.5 | 54.07 |
KRH00054 | Soybean | cytosol, peroxisome, vacuole | 47.64 | 53.11 |
KRH49188 | Soybean | cytosol, peroxisome, vacuole | 47.21 | 52.63 |
Bra005704.1-P | Field mustard | cytosol, peroxisome, vacuole | 44.64 | 49.76 |
CDX80799 | Canola | cytosol, peroxisome, vacuole | 44.64 | 49.76 |
CDY55115 | Canola | cytosol, peroxisome, vacuole | 44.64 | 49.76 |
AT5G02040.1 | Thale cress | cytosol, peroxisome, vacuole | 43.35 | 48.33 |
AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 42.92 | 47.85 |
Bra034847.1-P | Field mustard | cytosol, peroxisome, vacuole | 42.92 | 47.85 |
CDX80980 | Canola | cytosol, peroxisome, vacuole | 42.92 | 47.85 |
CDY14095 | Canola | cytosol, peroxisome, vacuole | 42.49 | 47.37 |
Bra005872.1-P | Field mustard | cytosol, peroxisome, vacuole | 42.49 | 47.37 |
CDY08532 | Canola | endoplasmic reticulum, peroxisome, vacuole | 42.49 | 47.37 |
CDY11345 | Canola | cytosol, peroxisome, vacuole | 42.49 | 47.37 |
CDY04974 | Canola | cytosol, peroxisome, vacuole | 42.06 | 46.89 |
AT5G05987.1 | Thale cress | cytosol, peroxisome, vacuole | 42.06 | 46.89 |
Bra028745.1-P | Field mustard | cytosol, peroxisome, vacuole | 41.63 | 46.41 |
CDY04976 | Canola | cytosol | 7.3 | 45.95 |
CDY53323 | Canola | plasma membrane | 36.48 | 45.7 |
CDX69570 | Canola | endoplasmic reticulum, extracellular | 12.88 | 42.25 |
GSMUA_Achr8P02500_001 | Banana | extracellular, golgi, peroxisome | 17.17 | 37.74 |
CDX73879 | Canola | plastid | 20.17 | 37.6 |
CDY01015 | Canola | cytosol | 42.49 | 33.9 |
CDY16186 | Canola | mitochondrion | 26.61 | 26.96 |
Protein Annotations
EnsemblPlants:TraesCS3A01G363600.1 | EnsemblPlantsGene:TraesCS3A01G363600 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 |
TMHMM:TMhelix | MapMan:22.8.4.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:611952439..611954405
Molecular Weight (calculated)
27155.0 Da
IEP (calculated)
9.065
GRAVY (calculated)
0.217
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRPATADD VVEAMREFVW FPPPRPASEF FSRFSAPRSC SKWISRLECN LYYYGTNYFI LILLIGMSFL QKPVAILTAF ATGLSIAFFS DSFAVTSTNK
101: VISIVRKFSP DLAAQMRPYI NDYLIAWFYY YSFTRFLGEL CLDCCQWHFS SVRHGRPSMK GSTHICGRPL SMWVFALFLF EVSCIFWASS CNFLIVPWEL
201: YVGLLVTLIH ASFRERNLKG RLNRFRKEFR EAW
101: VISIVRKFSP DLAAQMRPYI NDYLIAWFYY YSFTRFLGEL CLDCCQWHFS SVRHGRPSMK GSTHICGRPL SMWVFALFLF EVSCIFWASS CNFLIVPWEL
201: YVGLLVTLIH ASFRERNLKG RLNRFRKEFR EAW
001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.