Factsheet for VIT_08s0007g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_06s0080g00970.t01
VIT_07s0031g02730.t01
VIT_14s0060g01340.t01
VIT_15s0046g01760.t01
VIT_16s0013g00170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	VIT_14s0060g01340.t01	AT1G56330.1	21798944
AT5G02040.1	VIT_16s0013g00170.t01	AT1G56330.1	21798944
AT5G02040.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT5G02040.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT5G02040.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT5G02040.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00054	Soybean	cytosol, peroxisome, vacuole	90.43	90.43
KRH49188	Soybean	cytosol, peroxisome, vacuole	89.95	89.95
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	88.04	88.04
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	88.04	88.04
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	85.65	85.65
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	85.65	85.65
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	84.69	84.69
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	84.21	84.21
KXG22142	Sorghum	cytosol, peroxisome, vacuole	84.21	84.21
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	83.73	83.73
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	82.78	82.78
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	82.78	82.78
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	82.78	82.78
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	82.78	82.78
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	81.82	81.82
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	81.34	81.34
CDY55115	Canola	cytosol, peroxisome, vacuole	81.34	81.34
CDX80799	Canola	cytosol, peroxisome, vacuole	80.86	80.86
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	77.51	77.51
Zm00001d042866_P001	Maize	cytosol	24.4	62.2
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	54.55	55.88
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	13.4	51.85
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	55.98	50.21
TraesCS3D01G357100.1	Wheat	mitochondrion	56.94	47.79
GSMUA_Achr8P02510_001	Banana	extracellular	2.39	9.8

Protein Annotations

EntrezGene:100256204	wikigene:100256204	MapMan:22.8.4.3.1	EMBL:AM455643	ProteinID:CAN72272	ProteinID:CAN72272.1
ProteinID:CBI30487	ProteinID:CBI30487.3	UniProt:D7THH1	EMBL:FN595991	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EntrezGene:LOC100256204	wikigene:LOC100256204	PFAM:PF03208	PANTHER:PTHR12859
PANTHER:PTHR12859:SF0	InterPro:Prenylated_rab_accept_PRA1	TIGR:TC55904	TIGR:TC63360	TMHMM:TMhelix	UniParc:UPI0001983BD1
ArrayExpress:VIT_08s0007g01140	EnsemblPlantsGene:VIT_08s0007g01140	EnsemblPlants:VIT_08s0007g01140.t01	RefSeq:XP_002273794	RefSeq:XP_002273794.1	RefSeq:XP_003632665
RefSeq:XP_003632665.1	RefSeq:XP_003632666	RefSeq:XP_003632666.1	RefSeq:XP_019077191.1	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:D7THH1]

Coordinates

chr8:-:15244313..15249931

Molecular Weight (calculated)

24192.7 Da

IEP (calculated)

11.226

GRAVY (calculated)

0.271

Length

209 amino acids

Sequence
(BLAST)

001: MDWGNVTAED LIDALREVDW STPPRPLSEF FSRFTLPRSY SKWSSRLKCN FYYYRTNYFI MIVFILGMGF LRRPIAIVAA FLTALSIAFL NDSFAGTFSE
101: KVTRTVRQFS PHLAAKMRPP LTPVIRGRPS AKRSILICGR PRWVFVLIFS SVSFILWFVS CSILTVLWAL AIGLLATILH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.