Factsheet for Zm00001d010055_P003

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008982_P001
Zm00001d009211_P001
Zm00001d012776_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d037453_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d040278_P001
Zm00001d040752_P001
Zm00001d043551_P003
Zm00001d049068_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	Zm00001d009211_P001	AT1G56330.1	21798944
AT5G02040.1	Zm00001d040278_P001	AT1G56330.1	21798944
AT5G02040.1	Zm00001d040752_P001	AT1G56330.1	21798944
AT5G02040.1	Zm00001d049068_P001	AT1G56330.1	21798944
AT5G02040.1	Zm00001d008982_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d012776_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d016041_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d020229_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d020729_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d037453_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d038768_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d039316_P001	AT5G41600.1	21798944
AT5G02040.1	Zm00001d043551_P003	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22142	Sorghum	cytosol, peroxisome, vacuole	98.09	98.09
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	94.74	94.74
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	94.26	94.26
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	94.26	94.26
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	94.26	94.26
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	94.26	94.26
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	84.21	84.21
CDY04976	Canola	cytosol	14.83	83.78
KRH00054	Soybean	cytosol, peroxisome, vacuole	81.34	81.34
KRH49188	Soybean	cytosol, peroxisome, vacuole	80.86	80.86
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	79.43	79.43
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	79.43	79.43
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	78.47	78.47
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	78.47	78.47
CDX80799	Canola	cytosol, peroxisome, vacuole	74.16	74.16
CDY55115	Canola	cytosol, peroxisome, vacuole	74.16	74.16
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	74.16	74.16
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	73.68	73.68
CDX69570	Canola	endoplasmic reticulum, extracellular	23.45	69.01
CDY14095	Canola	cytosol, peroxisome, vacuole	66.99	66.99
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	66.99	66.99
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	66.99	66.99
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	66.51	66.51
CDY04974	Canola	cytosol, peroxisome, vacuole	66.03	66.03
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	65.55	65.55
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	65.55	65.55
Zm00001d042866_P001	Maize	cytosol	25.36	64.63
CDY11345	Canola	cytosol, peroxisome, vacuole	64.59	64.59
CDX80980	Canola	cytosol, peroxisome, vacuole	64.59	64.59
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	64.59	64.59
GSMUA_Achr10P...	Banana	endoplasmic reticulum, nucleus, plasma membrane	22.01	63.89
CDY53323	Canola	plasma membrane	55.5	62.37
CDX73879	Canola	plastid	36.36	60.8
CDY01015	Canola	cytosol	67.94	48.63
CDY16186	Canola	mitochondrion	45.45	41.3

Protein Annotations

EMBL:BT042846	EMBL:EU973609	EnsemblPlants:Zm00001d010055_P003	EnsemblPlants:Zm00001d010055_T003	EnsemblPlantsGene:Zm00001d010055	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208
ProteinID:AQK93353.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B800A	UniProt:B4G0F8	MapMan:22.8.4.3.1

Description

PRA1 family protein A3

Coordinates

chr8:-:97441830..97445959

Molecular Weight (calculated)

24272.9 Da

IEP (calculated)

10.822

GRAVY (calculated)

0.275

Length

209 amino acids

Sequence
(BLAST)

001: MDWSAVTAED LVDALREVDW SMPPRPVPEF FSRFTVPRSY SKWTSRLKCN LYYYRTNYFI LIMFILGMGF LWKPVAIVAA FMTGLSIAFL NDSFAVTFNE
101: KVTRTVRQFS PHLAAKLRPP ITPVLRGRPS SKRSIHICGR PRWVFVLFFS AVSCILWLTS CSLLTVLWAL LIALFATVLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.