Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 94.55 | 94.19 |
| Zm00001d012776_P001 | Maize | extracellular | 92.61 | 94.07 |
| Os01t0736900-01 | Rice | plasma membrane | 87.94 | 89.33 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 80.93 | 83.87 |
| TraesCS3A01G278800.1 | Wheat | golgi | 80.93 | 83.87 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 82.88 | 83.53 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 82.49 | 83.46 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 82.1 | 83.4 |
| Zm00001d020229_P001 | Maize | plasma membrane | 43.19 | 73.03 |
| Zm00001d020729_P001 | Maize | plasma membrane | 26.85 | 72.63 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 68.09 | 69.44 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.87 | 69.41 |
| Solyc03g007740.2.1 | Tomato | nucleus | 66.93 | 67.45 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.59 | 66.4 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 65.76 | 66.27 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 65.37 | 66.14 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.2 | 65.74 |
| KRH59988 | Soybean | mitochondrion | 64.59 | 65.35 |
| KRH40357 | Soybean | endoplasmic reticulum | 64.98 | 64.98 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 66.93 | 64.91 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 63.81 | 64.82 |
| Solyc01g095200.2.1 | Tomato | plastid | 66.15 | 64.64 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.03 | 64.54 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.03 | 64.54 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 67.7 | 64.44 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 62.65 | 64.4 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 21.79 | 64.37 |
| KRH00872 | Soybean | endoplasmic reticulum | 64.59 | 64.09 |
| KRH06560 | Soybean | endoplasmic reticulum | 63.81 | 64.06 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 63.03 | 64.03 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 63.42 | 63.92 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 66.93 | 63.7 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 61.87 | 63.6 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 68.87 | 63.44 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 63.03 | 63.03 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.2 | 62.74 |
| AT4G23630.2 | Thale cress | nucleus | 66.54 | 62.18 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.7 | 62.15 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 60.7 | 62.15 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 59.92 | 61.35 |
| Bra019285.1-P | Field mustard | cytosol | 63.81 | 61.19 |
| CDY10954 | Canola | cytosol | 64.2 | 61.11 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 60.31 | 60.78 |
| Bra000739.1-P | Field mustard | cytosol | 63.03 | 60.67 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 59.92 | 60.63 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 63.81 | 60.52 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 62.65 | 60.3 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 64.59 | 60.14 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 64.2 | 60.0 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.14 | 59.84 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 59.14 | 59.84 |
| Bra013717.1-P | Field mustard | nucleus | 64.2 | 59.78 |
| CDY24806 | Canola | cytosol | 63.42 | 59.49 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 57.59 | 59.2 |
| CDY41666 | Canola | cytosol | 63.42 | 59.06 |
| AT4G11220.1 | Thale cress | nucleus | 62.26 | 59.04 |
| Bra010539.1-P | Field mustard | cytosol | 61.48 | 58.74 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 57.98 | 58.66 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 57.59 | 58.5 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 67.7 | 56.86 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 34.24 | 54.66 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 65.76 | 53.82 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 52.14 | 53.17 |
| Zm00001d016041_P001 | Maize | extracellular | 47.08 | 52.61 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 12.06 | 51.67 |
| CDY05135 | Canola | mitochondrion | 61.87 | 50.8 |
| AT4G01230.2 | Thale cress | cytosol | 46.3 | 48.77 |
| CDY62522 | Canola | cytosol | 15.18 | 48.75 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 49.03 | 48.28 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 44.75 | 47.33 |
| CDY48510 | Canola | cytosol | 44.75 | 47.33 |
| Bra037369.1-P | Field mustard | cytosol | 44.75 | 47.33 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 41.25 | 42.74 |
| KRG91601 | Soybean | mitochondrion | 56.03 | 42.35 |
| Zm00001d038910_P001 | Maize | plasma membrane | 36.58 | 41.41 |
| Bra035242.1-P | Field mustard | cytosol | 30.35 | 39.0 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 32.68 | 38.01 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 26.46 | 37.78 |
| Zm00001d008590_P001 | Maize | plastid | 19.46 | 37.59 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 35.41 | 37.45 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 35.41 | 37.14 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 27.24 | 35.35 |
| Zm00001d001901_P002 | Maize | plasma membrane | 27.24 | 35.35 |
| Zm00001d047517_P001 | Maize | peroxisome | 28.79 | 32.46 |
| Zm00001d042846_P001 | Maize | plasma membrane | 26.07 | 31.9 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.29 | 30.72 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 21.4 | 23.5 |
Protein Annotations
| EntrezGene:100283279 | MapMan:13.7.2.1 | UniProt:B6TGL5 | EMBL:BT065964 | EMBL:EU964130 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003388 | ProteinID:ONM38434.1 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF99 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI000182E2A1 | EnsemblPlantsGene:Zm00001d043551 | EnsemblPlants:Zm00001d043551_P003 |
| EnsemblPlants:Zm00001d043551_T003 | SEG:seg | : | : | : | : |
Description
dehydrin6 dehydrin6
Coordinates
chr3:+:203608818..203613188
Molecular Weight (calculated)
28658.0 Da
IEP (calculated)
8.203
GRAVY (calculated)
0.053
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHKEEPVP ESVMDKITEK FHGGDSSSSS SDSDDEKKGS SLASAAEAMK AKIYRLFGRE RPVHSVLGGG KPADLILWRN RKISGGVLAG ATAIWLLFEV
101: MEYHLLTLVC HCLILSLAIL FLWSNASTFI NKSPPNIPEV KIPEDVAVNV ALSLRYEINR GFATLREIGH GRDLKKFLIV IAGLWLLSVL GSCCNFLTLF
201: YIVFVALYTV PVLYEKYEDK VDAFGEKAMT ELKKYYAIFD EKCLSKIPKG PLKDKKH
101: MEYHLLTLVC HCLILSLAIL FLWSNASTFI NKSPPNIPEV KIPEDVAVNV ALSLRYEINR GFATLREIGH GRDLKKFLIV IAGLWLLSVL GSCCNFLTLF
201: YIVFVALYTV PVLYEKYEDK VDAFGEKAMT ELKKYYAIFD EKCLSKIPKG PLKDKKH
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.