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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 62.2 62.7
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 62.6 62.35
Solyc03g007740.2.1 Tomato nucleus 62.6 62.35
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 61.42 61.18
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 59.45 59.68
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 58.66 59.36
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 58.27 58.96
GSMUA_Achr3P31920_001 Banana cytosol 50.39 58.45
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 59.06 58.14
Os01t0736900-01 Rice plasma membrane 57.87 58.1
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 57.87 58.1
Zm00001d043551_P003 Maize plasma membrane 58.66 57.98
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 57.48 57.94
KXG33320 Sorghum cytosol, nucleus, plasma membrane 58.66 57.75
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 56.3 57.66
Os01t0226300-01 Rice plasma membrane 40.16 57.3
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 57.48 57.25
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 56.69 56.92
TraesCS3A01G278800.1 Wheat golgi 55.51 56.85
Os05t0526400-01 Rice plasma membrane 55.91 56.57
Zm00001d012776_P001 Maize extracellular 56.3 56.52
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 54.72 56.05
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 54.72 55.82
GSMUA_Achr4P08400_001 Banana cytosol 55.51 55.73
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 54.72 55.16
EES19841 Sorghum cytosol, nucleus, plasma membrane 55.12 54.9
Zm00001d038768_P001 Maize extracellular, mitochondrion 53.54 53.54
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.6 53.33
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 50.0 50.8
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 55.51 50.54
KXG31516 Sorghum cytosol, nucleus, plasma membrane 55.91 50.0
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 56.3 50.0
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 55.91 49.65
TraesCS1A01G346800.3 Wheat plasma membrane 48.82 49.21
KRH35223 Soybean cytosol, nucleus, plasma membrane 47.64 48.4
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 42.13 46.52
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 55.91 46.41
Zm00001d020729_P001 Maize plasma membrane 17.32 46.32
Zm00001d016041_P001 Maize extracellular 41.34 45.65
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 46.85 45.59
Zm00001d020229_P001 Maize plasma membrane 27.17 45.39
EER89811 Sorghum peroxisome 45.67 45.31
HORVU3Hr1G030760.2 Barley mitochondrion 55.91 45.22
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 46.06 44.83
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 40.94 44.83
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 56.3 44.41
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 45.28 44.23
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 45.28 44.23
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 45.28 44.23
Os06t0503400-01 Rice plasma membrane 44.49 42.64
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 40.94 41.94
GSMUA_Achr3P15760_001 Banana cytosol 23.23 39.33
HORVU7Hr1G081290.4 Barley plastid 35.04 38.53
HORVU7Hr1G075700.2 Barley mitochondrion 44.88 38.0
VIT_17s0000g03260.t01 Wine grape plasma membrane 31.1 37.26
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 28.74 35.27
VIT_08s0007g01720.t01 Wine grape plasma membrane 28.74 34.93
KRG91601 Soybean mitochondrion 46.46 34.71
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.05 31.11
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 23.23 27.57
VIT_01s0011g04030.t01 Wine grape cytosol 29.53 20.05
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 19.68 15.29
Protein Annotations
EntrezGene:100262972wikigene:100262972MapMan:13.7.2.1ProteinID:CBI22609ProteinID:CBI22609.3ncoils:Coil
UniProt:E0CUQ9EMBL:FN595243GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388EntrezGene:LOC100262972
wikigene:LOC100262972PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI00015CC2ADArrayExpress:VIT_16s0050g01790EnsemblPlantsGene:VIT_16s0050g01790EnsemblPlants:VIT_16s0050g01790.t01RefSeq:XP_002275520
RefSeq:XP_002275520.1:::::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:E0CUQ9]
Coordinates
chr16:+:18741352..18742994
Molecular Weight (calculated)
28294.7 Da
IEP (calculated)
8.587
GRAVY (calculated)
0.100
Length
254 amino acids
Sequence
(BLAST)
001: MADHAGESES AMESVMETIT AKLHGYDSPS SSDSEDGKKS LVEAVKSKSY RLFGREKPLH KVLGGGKPAD VFLWRNKKIS ASVLGCATAI WVLFEMLEYQ
101: LLPLLCHILM LSLASLFLWS NASIVIKKSP PNIPEVGVPE KAVMEITSAL LYAINRGLTS LHNIASGRHL KQFLAVTAGL WVLSAVGRWC NFITLFYLLF
201: VLLHTVPVIY EKYEDEVDSS AEKVKTEIKN QYRVLCEKVL RGQPEDVLKV RKLS
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.