Factsheet for VIT_12s0028g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14529	Soybean	cytosol, peroxisome, plasma membrane	70.56	71.43
KRH73588	Soybean	plasma membrane	68.55	69.39
KRH45979	Soybean	cytosol, nucleus, plasma membrane	66.13	67.49
Solyc12g006290.1.1	Tomato	nucleus	60.89	64.81
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	64.11	64.11
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	64.11	62.6
KRG99024	Soybean	plasma membrane	66.53	62.5
Solyc07g044880.2.1	Tomato	mitochondrion	35.48	61.97
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	59.27	60.74
Zm00001d034313_P001	Maize	cytosol, nucleus, plasma membrane	60.08	60.08
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	59.27	59.51
CDY08616	Canola	plasma membrane	56.45	58.58
CDY00916	Canola	plasma membrane	56.45	58.58
Bra029827.1-P	Field mustard	plasma membrane	56.45	58.58
EER90788	Sorghum	cytosol, nucleus, plasma membrane	58.06	58.3
Os07t0142000-01	Rice	plasma membrane	56.45	56.91
TraesCS5B01G420300.1	Wheat	cytosol, nucleus, plasma membrane	58.87	56.37
TraesCS5D01G426200.1	Wheat	cytosol, peroxisome, plasma membrane	58.47	55.98
Zm00001d018781_P001	Maize	extracellular, mitochondrion	54.84	55.97
HORVU5Hr1G101680.2	Barley	cytosol, endoplasmic reticulum, peroxisome	58.87	55.94
TraesCS5A01G418200.1	Wheat	cytosol, peroxisome, plasma membrane	58.87	55.94
PGSC0003DMT400074138	Potato	plasma membrane	66.94	55.33
AT3G10260.3	Thale cress	plasma membrane	58.87	54.68
TraesCS2D01G254800.1	Wheat	cytosol, peroxisome, vacuole	54.44	54.66
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	53.23	53.44
TraesCS2B01G267800.2	Wheat	cytosol, peroxisome, vacuole	53.23	53.44
KXG34376	Sorghum	plasma membrane	56.85	44.9
VIT_02s0025g00590.t01	Wine grape	mitochondrion	10.48	43.33
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	42.74	42.74
VIT_16s0050g01790.t01	Wine grape	cytosol, nucleus, plasma membrane	41.94	40.94
CDY56712	Canola	mitochondrion	58.06	40.56
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	40.73	39.61
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	39.92	39.29
VIT_17s0000g03260.t01	Wine grape	plasma membrane	31.05	36.32
HORVU2Hr1G060770.16	Barley	plasma membrane	52.82	34.2
VIT_03s0180g00170.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	27.82	33.33
VIT_08s0007g01720.t01	Wine grape	plasma membrane	27.42	32.54
VIT_01s0011g04030.t01	Wine grape	cytosol	35.48	23.53
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	19.35	22.43
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	12.5	17.22
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	18.95	14.37

Protein Annotations

EntrezGene:100267805	wikigene:100267805	MapMan:13.7.2.1	ProteinID:CBI22067	ProteinID:CBI22067.3	UniProt:E0CU01
EMBL:FN595235	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EntrezGene:LOC100267805	wikigene:LOC100267805
PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF62	InterPro:Reticulon	TIGR:TC52269
TIGR:TC57525	TMHMM:TMhelix	UniParc:UPI00015C9D6D	ArrayExpress:VIT_12s0028g01090	EnsemblPlantsGene:VIT_12s0028g01090	EnsemblPlants:VIT_12s0028g01090.t01
unigene:Vvi.2252	RefSeq:XP_002283015	RefSeq:XP_002283015.1	RefSeq:XP_002283019	RefSeq:XP_002283019.1	RefSeq:XP_002283026
RefSeq:XP_002283026.1	SEG:seg	:	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:E0CU01]

Coordinates

chr12:+:1612912..1619165

Molecular Weight (calculated)

27724.8 Da

IEP (calculated)

9.067

GRAVY (calculated)

0.198

Length

248 amino acids

Sequence
(BLAST)

001: MPEGITAEKL LNNIMETISD NAQKKKSVSF FEEEKSNSVT SQFKRLFGRE KPVYNLLGAG KSADLMLWRN KKISASFITG ATLIWVLFEW LNYHFLTLLC
101: FAVVLGMIAQ FVWSNASGVF SRSSSEVPRI VLPDELFQNI GVAVGVQINQ ALGFLQDVAC GGNLKQFLLV VVSLWAAAVI GSWCNFLTVL YVGFIAAHTL
201: PVLYERYEDQ VDGFVYQVLG QLQHNYRKLD SGFLSKIPKG SLKGKKHE

Best Arabidopsis Sequence Match ( AT3G10260.3 )
(BLAST)

001: MKSTFICKLS NLRFRLCFRI MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.