Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- plasma membrane 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 79.27 | 78.95 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 78.86 | 78.54 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 78.46 | 78.14 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 72.76 | 73.66 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 71.95 | 71.66 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 61.79 | 61.29 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 58.94 | 59.67 |
| KXG34376 | Sorghum | plasma membrane | 75.61 | 59.24 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 58.13 | 58.37 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 56.5 | 57.44 |
| KRH73588 | Soybean | plasma membrane | 56.91 | 57.14 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 56.91 | 56.45 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 56.91 | 55.12 |
| KRG99024 | Soybean | plasma membrane | 58.54 | 54.55 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 31.3 | 54.23 |
| Solyc12g006290.1.1 | Tomato | nucleus | 49.19 | 51.93 |
| Bra029827.1-P | Field mustard | plasma membrane | 48.37 | 49.79 |
| CDY00916 | Canola | plasma membrane | 48.37 | 49.79 |
| CDY08616 | Canola | plasma membrane | 48.37 | 49.79 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 76.83 | 49.35 |
| AT3G10260.3 | Thale cress | plasma membrane | 49.19 | 45.32 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 52.03 | 42.67 |
| Os01t0226300-01 | Rice | plasma membrane | 29.67 | 41.01 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 38.21 | 40.87 |
| Os01t0736900-01 | Rice | plasma membrane | 40.65 | 39.53 |
| Os05t0526400-01 | Rice | plasma membrane | 39.84 | 39.04 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 37.4 | 37.1 |
| Os05t0312500-01 | Rice | plasma membrane | 36.59 | 35.86 |
| CDY56712 | Canola | mitochondrion | 50.0 | 34.65 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 31.71 | 33.77 |
| Os04t0670000-01 | Rice | plasma membrane | 26.02 | 32.16 |
| Os01t0139000-00 | Rice | plasma membrane | 27.64 | 31.92 |
| Os06t0503400-01 | Rice | plasma membrane | 34.15 | 31.7 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 24.8 | 30.05 |
| Os03t0336600-02 | Rice | plasma membrane | 28.05 | 29.87 |
| Os04t0367400-02 | Rice | plasma membrane | 21.54 | 24.88 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:4342374 | EMBL:AK059877 | EMBL:AK099414 | ProteinID:BAC21398.1 | ProteinID:BAF20781.1 |
| ProteinID:BAT00017.1 | ProteinID:EAZ38661.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | EnsemblPlantsGene:Os07g0142000 |
| EnsemblPlants:Os07t0142000-01 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF93 | UniProt:Q8H4K6 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI00000AD6B3 | RefSeq:XP_015645106.1 | RefSeq:XP_015645107.1 | SEG:seg |
Description
Reticulon family protein. (Os07t0142000-01)
Coordinates
chr7:+:2170647..2172805
Molecular Weight (calculated)
26979.9 Da
IEP (calculated)
8.319
GRAVY (calculated)
0.246
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEHSENAAA NIVDSIVDAI ADNLPKQKSV RFEDGSISDQ AKRLFGGQKS VHHVLGGGKS ADVLLWRNKK ISSSVLAVAT AVWVFFEWLD YHFLTIACFV
101: LVLGMVVQFA WSTFAGMLNG SPSKVPRVEL PDELFANIGS AIGTQVNKFL GTLQDVSCGR DLKNFLLVIA GFFAAAIIGS WCNLLTVIYI GFVCAHTLPV
201: LYEKNQEKVD EFLYNTLGLL QNQYQKLDKG VLGKVPKGII KLKKSD
101: LVLGMVVQFA WSTFAGMLNG SPSKVPRVEL PDELFANIGS AIGTQVNKFL GTLQDVSCGR DLKNFLLVIA GFFAAAIIGS WCNLLTVIYI GFVCAHTLPV
201: LYEKNQEKVD EFLYNTLGLL QNQYQKLDKG VLGKVPKGII KLKKSD
001: MKSTFICKLS NLRFRLCFRI MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.