Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92307 | Sorghum | peroxisome | 83.12 | 84.21 |
| Zm00001d047517_P001 | Maize | peroxisome | 80.95 | 82.02 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 79.22 | 80.62 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 78.79 | 80.18 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 78.79 | 80.18 |
| HORVU4Hr1G050020.1 | Barley | plastid | 78.79 | 70.27 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 54.11 | 65.79 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 64.94 | 65.22 |
| KRG93546 | Soybean | plasma membrane | 51.08 | 59.3 |
| KRH18469 | Soybean | plasma membrane | 50.22 | 58.59 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 59.31 | 57.56 |
| Bra034153.1-P | Field mustard | plasma membrane | 49.78 | 51.57 |
| CDY36282 | Canola | plasma membrane | 49.35 | 51.12 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 50.22 | 48.54 |
| CDY08567 | Canola | cytosol | 50.22 | 48.13 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 49.78 | 48.12 |
| AT3G10915.7 | Thale cress | plasma membrane | 51.95 | 47.81 |
| Os04t0670000-01 | Rice | plasma membrane | 32.47 | 37.69 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 35.06 | 35.22 |
| Os01t0226300-01 | Rice | plasma membrane | 25.97 | 33.71 |
| Os04t0367400-02 | Rice | plasma membrane | 30.74 | 33.33 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 29.0 | 33.0 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 41.13 | 29.05 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 29.0 | 29.0 |
| Os06t0503400-01 | Rice | plasma membrane | 32.9 | 28.68 |
| Os07t0142000-01 | Rice | plasma membrane | 29.87 | 28.05 |
| Os01t0139000-00 | Rice | plasma membrane | 25.54 | 27.7 |
| Os01t0736900-01 | Rice | plasma membrane | 29.44 | 26.88 |
| Os05t0526400-01 | Rice | plasma membrane | 29.0 | 26.69 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 27.27 | 25.51 |
| Os05t0312500-01 | Rice | plasma membrane | 26.41 | 24.3 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:4332765 | ProteinID:ABF95822.1 | EMBL:AK061202 | EMBL:AK103014 | EMBL:AK104475 |
| ProteinID:BAF11957.1 | ProteinID:BAS84087.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | EnsemblPlantsGene:Os03g0336600 |
| EnsemblPlants:Os03t0336600-02 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF67 | UniProt:Q10LS6 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0000DB4D82 | RefSeq:XP_015628718.1 | SEG:seg | : |
Description
Reticulon family protein. (Os03t0336600-02)
Coordinates
chr3:-:12480829..12483098
Molecular Weight (calculated)
25198.0 Da
IEP (calculated)
9.773
GRAVY (calculated)
0.368
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAGAGAG LAEAANGGIE SSAADPSTSG TASRLSVHRI AGGGKAADII LWKRGRVTIG VIFGATMAWW LFEKSGLSFL TVCSDVLLIL IVVQFIRIKV
101: AGLLNKQPRP LPELVLSEEM VSNAAASFRV KVNNMLMIAH DITLGKDFRL FFQVVLLLWL LSVIGNFCSS ITLAYFGTIA LVTIPALYSK NQEQVDRYAG
201: MVHRNISRHY KIVDENVMSR LPRSFIRDKE D
101: AGLLNKQPRP LPELVLSEEM VSNAAASFRV KVNNMLMIAH DITLGKDFRL FFQVVLLLWL LSVIGNFCSS ITLAYFGTIA LVTIPALYSK NQEQVDRYAG
201: MVHRNISRHY KIVDENVMSR LPRSFIRDKE D
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.