Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G171300.2 | Wheat | peroxisome | 98.68 | 98.68 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 98.68 | 98.68 |
| HORVU4Hr1G050020.1 | Barley | plastid | 96.04 | 84.17 |
| EER92307 | Sorghum | peroxisome | 79.74 | 79.39 |
| Os03t0336600-02 | Rice | plasma membrane | 80.18 | 78.79 |
| Zm00001d047517_P001 | Maize | peroxisome | 78.41 | 78.07 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 52.86 | 63.16 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 63.44 | 62.61 |
| KRH18469 | Soybean | plasma membrane | 48.9 | 56.06 |
| KRG93546 | Soybean | plasma membrane | 48.9 | 55.78 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 57.27 | 54.62 |
| Bra034153.1-P | Field mustard | plasma membrane | 49.34 | 50.22 |
| CDY36282 | Canola | plasma membrane | 48.9 | 49.78 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 48.9 | 46.44 |
| CDY08567 | Canola | cytosol | 48.9 | 46.06 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 48.46 | 46.03 |
| AT3G10915.7 | Thale cress | plasma membrane | 50.66 | 45.82 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 29.52 | 33.67 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 29.96 | 31.05 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.48 | 29.23 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 31.28 | 28.74 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 40.97 | 28.44 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 30.84 | 28.11 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 30.4 | 27.27 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 27.75 | 26.92 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 27.31 | 26.16 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 30.4 | 24.13 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 26.43 | 24.0 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 26.43 | 23.17 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G169100.2 | EnsemblPlantsGene:TraesCS4B01G169100 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF67 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr4B:+:369485140..369487059
Molecular Weight (calculated)
25200.9 Da
IEP (calculated)
8.920
GRAVY (calculated)
0.331
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: METSASGAEP ANAGIEVSAD PCSSAGGGHR LSVHQIVGGG KAADIILWKC KRATVGVIFG ATIAWWLFKK SELSFLTICC DVLLILIVVQ LIWVKISGLL
101: NKQPRQLPEL VLSEEMVNNA AASFRVKVNN MLMIAHDITL GKDFRLFFQV VSVLWLLSVI GNFYSSVTLA YIGTIALVTV PVLYHRHQEH VDRYAGMVHR
201: NISRHYKIVD ENVISRLPRS FIRDKDD
101: NKQPRQLPEL VLSEEMVNNA AASFRVKVNN MLMIAHDITL GKDFRLFFQV VSVLWLLSVI GNFYSSVTLA YIGTIALVTV PVLYHRHQEH VDRYAGMVHR
201: NISRHYKIVD ENVISRLPRS FIRDKDD
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.