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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034153.1-P Field mustard plasma membrane 97.76 97.76
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 86.55 80.75
CDY08567 Canola cytosol 87.0 80.5
AT3G10915.7 Thale cress plasma membrane 82.06 72.91
Solyc06g049060.2.1 Tomato mitochondrion, plasma membrane 53.36 62.63
KRG93546 Soybean plasma membrane 52.47 58.79
KRH18469 Soybean plasma membrane 51.12 57.58
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 60.54 56.72
EER92307 Sorghum peroxisome 52.91 51.75
GSMUA_Achr3P09820_001 Banana cytosol, peroxisome, plasma membrane 53.36 51.74
Zm00001d047517_P001 Maize peroxisome 52.47 51.32
TraesCS4D01G171300.2 Wheat peroxisome 50.67 49.78
Os03t0336600-02 Rice plasma membrane 51.12 49.35
TraesCS4A01G135900.1 Wheat peroxisome 50.22 49.34
TraesCS4B01G169100.2 Wheat cytosol, peroxisome, vacuole 49.78 48.9
HORVU4Hr1G050020.1 Barley plastid 51.57 44.4
CDY46172 Canola plastid 30.49 33.66
CDX99221 Canola plasma membrane 30.04 33.0
CDX82294 Canola plastid 28.7 32.65
CDX67589 Canola golgi, plasma membrane, vacuole 29.15 32.02
CDY51584 Canola plasma membrane 28.7 31.53
CDX78209 Canola golgi, plasma membrane, vacuole 28.25 30.73
CDY22971 Canola plasma membrane 26.91 30.61
CDY22970 Canola plasma membrane 26.91 30.61
CDX73507 Canola cytosol, golgi, plasma membrane 27.35 29.76
CDY66516 Canola endoplasmic reticulum, extracellular 24.66 29.57
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 26.91 29.56
CDX75962 Canola plasma membrane 29.6 29.46
CDY67571 Canola plasma membrane 29.6 29.46
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 29.15 29.02
CDX71213 Canola plasma membrane 26.01 28.57
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 40.81 27.83
CDX79993 Canola cytosol, peroxisome, plasma membrane 30.94 27.49
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 30.49 27.2
CDY38194 Canola cytosol, nucleus, plasma membrane 30.49 27.2
CDY00916 Canola plasma membrane 29.15 27.2
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 30.49 27.09
CDY42012 Canola cytosol, peroxisome, plasma membrane 30.49 27.09
CDY08616 Canola plasma membrane 28.7 26.78
CDY53913 Canola cytosol, peroxisome, plasma membrane 30.49 26.77
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 30.04 26.69
CDY52012 Canola cytosol, peroxisome, plasma membrane 30.04 26.38
CDX96038 Canola plasma membrane 23.77 25.12
CDY07184 Canola cytosol, peroxisome, plasma membrane 27.35 25.1
CDY01898 Canola plasma membrane 23.77 25.0
CDY62522 Canola cytosol 8.97 25.0
CDX81500 Canola plasma membrane 22.87 24.52
CDX90792 Canola cytosol, peroxisome, plasma membrane 29.15 24.34
CDY10954 Canola cytosol 29.15 24.07
CDY48510 Canola cytosol 26.01 23.87
CDY24806 Canola cytosol 29.15 23.72
CDY57657 Canola cytosol, nucleus, plasma membrane 29.15 23.64
CDY13240 Canola cytosol, peroxisome, plasma membrane 17.04 23.6
CDY44123 Canola cytosol, nucleus, plasma membrane 29.15 23.55
CDY41666 Canola cytosol 28.7 23.19
CDX76854 Canola plasma membrane 20.63 22.22
CDY46067 Canola plasma membrane 20.18 21.63
CDY05135 Canola mitochondrion 29.15 20.77
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 22.42 20.16
CDX86802 Canola cytosol, nucleus, peroxisome 21.08 19.18
CDX89122 Canola extracellular, mitochondrion 13.0 18.95
CDY56712 Canola mitochondrion 28.7 18.03
CDY12701 Canola plasma membrane 23.32 17.22
Protein Annotations
MapMan:13.7.2.1GO:A0A078HES3UniProt:A0A078HES3EnsemblPlants:CDY36282ProteinID:CDY36282ProteinID:CDY36282.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00060249001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF67InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EE135CSEG:seg
Description
BnaA01g31360DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HES3]
Coordinates
chrLK032372:-:82699..84333
Molecular Weight (calculated)
24976.4 Da
IEP (calculated)
7.570
GRAVY (calculated)
0.348
Length
223 amino acids
Sequence
(BLAST)
001: MDSSSDNEGE FDGRNEGGSI SDYRLLGRQV TVHQFMGAAD LLLWRKRNHS LGVIVLSTVA WLIFEFPGLP FLSVSSDVLL IVVILSFVLA QASGFRSRHV
101: NSLPELVLSE EMVNSAAASF RVKLNHLLVM AHDVTVGNDF RLFFKVVICL WLLSAIGCYI SFCTLVYIGT ILSVTIPALY SKYQSRVDKC CGLIHRQLSH
201: HYKLVDENVI SRLSWSFSKD KDS
Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.