CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	95.44	96.23
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	94.61	95.4
CDY36282	Canola	plasma membrane	80.5	87.0
AT3G10915.7	Thale cress	plasma membrane	77.59	74.5
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	49.38	62.63
KRG93546	Soybean	plasma membrane	48.96	59.3
KRH18469	Soybean	plasma membrane	48.13	58.59
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	55.6	56.3
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	50.62	53.04
EER92307	Sorghum	peroxisome	48.96	51.75
Zm00001d047517_P001	Maize	peroxisome	48.55	51.32
Os03t0336600-02	Rice	plasma membrane	48.13	50.22
TraesCS4D01G171300.2	Wheat	peroxisome	46.89	49.78
TraesCS4A01G135900.1	Wheat	peroxisome	46.47	49.34
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	46.06	48.9
HORVU4Hr1G050020.1	Barley	plastid	47.72	44.4
CDY46172	Canola	plastid	29.46	35.15
CDX67589	Canola	golgi, plasma membrane, vacuole	29.46	34.98
CDX99221	Canola	plasma membrane	29.05	34.48
CDY51584	Canola	plasma membrane	29.05	34.48
CDX82294	Canola	plastid	27.8	34.18
CDX78209	Canola	golgi, plasma membrane, vacuole	28.22	33.17
CDY22971	Canola	plasma membrane	26.56	32.65
CDY22970	Canola	plasma membrane	26.56	32.65
CDX73507	Canola	cytosol, golgi, plasma membrane	27.39	32.2
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.56	31.53
CDX71213	Canola	plasma membrane	25.73	30.54
CDY51936	Canola	endoplasmic reticulum, peroxisome, plasma membrane	28.22	30.36
CDY67571	Canola	plasma membrane	28.22	30.36
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	40.66	29.97
CDX75962	Canola	plasma membrane	27.8	29.91
CDY38194	Canola	cytosol, nucleus, plasma membrane	30.71	29.6
CDY08353	Canola	cytosol, endoplasmic reticulum, nucleus	30.71	29.6
CDY34396	Canola	cytosol, endoplasmic reticulum, nucleus	30.71	29.48
CDY25557	Canola	cytosol, endoplasmic reticulum, nucleus	30.29	29.08
CDX79993	Canola	cytosol, peroxisome, plasma membrane	30.29	29.08
CDY66516	Canola	endoplasmic reticulum, extracellular	22.41	29.03
CDY53913	Canola	cytosol, peroxisome, plasma membrane	30.29	28.74
CDY42012	Canola	cytosol, peroxisome, plasma membrane	29.88	28.69
CDY52012	Canola	cytosol, peroxisome, plasma membrane	29.88	28.35
CDY00916	Canola	plasma membrane	27.39	27.62
CDY62522	Canola	cytosol	9.13	27.5
CDY08616	Canola	plasma membrane	26.97	27.2
CDX96038	Canola	plasma membrane	23.65	27.01
CDX81500	Canola	plasma membrane	23.24	26.92
CDY01898	Canola	plasma membrane	23.65	26.89
CDY07184	Canola	cytosol, peroxisome, plasma membrane	26.97	26.75
CDY10954	Canola	cytosol	29.46	26.3
CDX90792	Canola	cytosol, peroxisome, plasma membrane	29.05	26.22
CDY48510	Canola	cytosol	26.14	25.93
CDY44123	Canola	cytosol, nucleus, plasma membrane	29.46	25.72
CDY13240	Canola	cytosol, peroxisome, plasma membrane	17.01	25.47
CDY57657	Canola	cytosol, nucleus, plasma membrane	29.05	25.45
CDY24806	Canola	cytosol	28.63	25.18
CDY41666	Canola	cytosol	28.63	25.0
CDX76854	Canola	plasma membrane	19.09	22.22
CDY05135	Canola	mitochondrion	28.63	22.04
CDY46067	Canola	plasma membrane	18.26	21.15
CDX86802	Canola	cytosol, nucleus, peroxisome	19.92	19.59
CDX89122	Canola	extracellular, mitochondrion	12.03	18.95
CDY12701	Canola	plasma membrane	23.65	18.87
CDY56712	Canola	mitochondrion	27.39	18.59
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	19.09	18.55

Protein Annotations

EnsemblPlants:CDY08567	EnsemblPlantsGene:GSBRNA2T00000353001	InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF67
PFAM:PF02453	PFscan:PS50845	ProteinID:CDY08567	ProteinID:CDY08567.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE1736	UniProt:A0A078F642	MapMan:13.7.2.1	:	:	:

Description

BnaA05g28030DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078F642]

Coordinates

chrLK031986:+:749099..750679

Molecular Weight (calculated)

26849.4 Da

IEP (calculated)

7.218

GRAVY (calculated)

0.219

Length

241 amino acids

Sequence
(BLAST)

001: MDSSSDIEGD SEGRNEGGGS TSDYRLLGRQ VTVHQFMGGG KGESFLCIGD HFFFLSADLL LWRRRNHSLG VIVLSTAAWL TFELSGLPFL SVSSDVLLIG
101: IIISFVHAQV SSFRNRQTDS LPELVLSEEM VNSTAASFRV KLNHLLVMAH DVTVGNDFRL FFKVVICLWL LSAIGSYISF CTLVYIGTIL SVTIPALYSK
201: YQRKIDKCCG LIHRQLSHQY KLVDENVISK LSWSLSKDKD S

Best Arabidopsis Sequence Match ( AT3G10915.5 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK GEFFFPEFHF GYSRKWKTWQ FIAADLLLWR RRHLSLGVII ISTVAWLIFE FSGLPFLSVS
101: SDVLLIVIMI SFVHARVSAF RNRQLHSLPE LVLSEEMVNS AAASFRIKLN HLLVMAHDVT VGNDFRLFFK QVVICLWLLS AIGSYISLCT LLYIGTILSV
201: TIPALYSKYQ SKVDKCCGTI HRRLSHHYKI VDENVISRLS WSLSKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.