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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019285.1-P Field mustard cytosol 97.78 98.51
CDY44123 Canola cytosol, nucleus, plasma membrane 93.33 91.3
AT4G23630.2 Thale cress nucleus 92.96 91.27
CDY57657 Canola cytosol, nucleus, plasma membrane 91.85 90.18
CDY24806 Canola cytosol 91.11 89.78
CDY41666 Canola cytosol 90.74 88.77
CDX90792 Canola cytosol, peroxisome, plasma membrane 82.22 83.15
CDY13240 Canola cytosol, peroxisome, plasma membrane 42.22 70.81
CDY05135 Canola mitochondrion 81.48 70.29
KRH41254 Soybean cytosol, nucleus, plasma membrane 65.19 69.29
KRH59988 Soybean mitochondrion 65.19 69.29
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 64.44 69.05
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 63.7 68.53
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 63.33 68.4
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 63.33 68.13
CDY38194 Canola cytosol, nucleus, plasma membrane 62.96 68.0
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 63.33 67.06
Zm00001d012776_P001 Maize extracellular 61.48 65.61
Os05t0526400-01 Rice plasma membrane 60.37 64.94
KXG33320 Sorghum cytosol, nucleus, plasma membrane 61.85 64.73
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 60.0 64.54
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.26 64.52
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 64.44 64.44
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 64.44 64.44
Os01t0736900-01 Rice plasma membrane 60.37 64.43
Zm00001d043551_P003 Maize plasma membrane 61.11 64.2
Os01t0226300-01 Rice plasma membrane 42.22 64.04
CDX79993 Canola cytosol, peroxisome, plasma membrane 59.26 63.74
TraesCS3A01G278800.1 Wheat golgi 58.52 63.71
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 59.63 63.64
CDY42012 Canola cytosol, peroxisome, plasma membrane 58.89 63.35
EES19841 Sorghum cytosol, nucleus, plasma membrane 59.63 63.14
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 59.63 63.14
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 58.52 62.95
CDY62522 Canola cytosol 18.52 62.5
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 57.41 62.5
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 57.41 62.25
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 59.26 62.02
CDY52012 Canola cytosol, peroxisome, plasma membrane 58.15 61.81
Zm00001d038768_P001 Maize extracellular, mitochondrion 58.15 61.81
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 56.67 60.71
CDY53913 Canola cytosol, peroxisome, plasma membrane 56.67 60.24
GSMUA_Achr3P31920_001 Banana cytosol 47.78 58.9
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 54.81 58.73
GSMUA_Achr4P08400_001 Banana cytosol 52.96 56.52
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 56.67 54.84
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 50.0 54.0
KXG31516 Sorghum cytosol, nucleus, plasma membrane 56.67 53.87
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 57.04 53.85
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 56.67 53.5
Zm00001d020229_P001 Maize plasma membrane 28.89 51.32
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 43.7 51.3
TraesCS1A01G346800.3 Wheat plasma membrane 47.78 51.19
Zm00001d016041_P001 Maize extracellular 43.33 50.87
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 42.96 50.0
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 48.15 49.81
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 55.93 49.35
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.04 48.85
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 47.04 48.85
HORVU3Hr1G030760.2 Barley mitochondrion 56.67 48.73
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.67 48.46
EER89811 Sorghum peroxisome 45.93 48.44
Zm00001d020729_P001 Maize plasma membrane 17.04 48.42
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 56.67 47.52
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 45.56 47.13
CDY07184 Canola cytosol, peroxisome, plasma membrane 41.85 46.5
CDY48510 Canola cytosol 41.85 46.5
Os06t0503400-01 Rice plasma membrane 45.56 46.42
CDX86802 Canola cytosol, nucleus, peroxisome 40.74 44.9
HORVU7Hr1G081290.4 Barley plastid 38.15 44.59
HORVU7Hr1G075700.2 Barley mitochondrion 46.67 42.0
GSMUA_Achr3P15760_001 Banana cytosol 22.96 41.33
CDY00916 Canola plasma membrane 34.07 38.49
CDY08616 Canola plasma membrane 32.96 37.24
CDY46172 Canola plastid 27.41 36.63
CDX75962 Canola plasma membrane 30.37 36.61
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 30.37 36.61
CDX99221 Canola plasma membrane 27.41 36.45
CDY66516 Canola endoplasmic reticulum, extracellular 24.44 35.48
CDY67571 Canola plasma membrane 29.26 35.27
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 23.33 35.0
CDX82294 Canola plastid 25.19 34.69
CDY22970 Canola plasma membrane 24.44 33.67
CDY22971 Canola plasma membrane 24.44 33.67
CDX67589 Canola golgi, plasma membrane, vacuole 24.81 33.0
CDY51584 Canola plasma membrane 24.81 33.0
CDX96038 Canola plasma membrane 25.56 32.7
CDY01898 Canola plasma membrane 25.56 32.55
CDX81500 Canola plasma membrane 24.81 32.21
CDX89122 Canola extracellular, mitochondrion 17.78 31.37
CDX71213 Canola plasma membrane 23.33 31.03
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 23.33 31.03
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 27.04 30.54
CDX78209 Canola golgi, plasma membrane, vacuole 22.96 30.24
CDX73507 Canola cytosol, golgi, plasma membrane 22.59 29.76
CDY08567 Canola cytosol 26.3 29.46
CDY36282 Canola plasma membrane 24.07 29.15
CDY56712 Canola mitochondrion 34.07 25.92
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 22.96 25.0
CDY46067 Canola plasma membrane 18.52 24.04
CDX76854 Canola plasma membrane 18.15 23.67
CDY12701 Canola plasma membrane 25.19 22.52
Protein Annotations
MapMan:13.7.2.1GO:A0A078FDD2UniProt:A0A078FDD2EnsemblPlants:CDY10954ProteinID:CDY10954ProteinID:CDY10954.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00048887001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EED47BSEG:seg
Description
BnaA03g46130DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDD2]
Coordinates
chrLK032008:+:286317..287773
Molecular Weight (calculated)
30182.0 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.130
Length
270 amino acids
Sequence
(BLAST)
001: MTDEHKHDES VTASEPAVEV VERESLMDKI SEKLHHGGDS SSSDEDDDKK KKKSSESPSS MKSKVYRLFG REKPVHKVLG GGKPADIFMW KNKKMSGGVL
101: GGATAAWVLF ELMEYHLLTL LCHVMIVVLA VLFLWSNATM FINKSPPKIP EVHIPEEPIL QLASGLRVEI NRGFSSLREI ASGRDLKKFL TAIAGLWVMS
201: ILGGWFNFLT LAYIALVLLF TVPLAYDKYE DKVDPLGEKA MIEIKKQYAV LDEKVLSKIP LGPLKNKKKD
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.