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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY53913 Canola cytosol, peroxisome, plasma membrane 98.03 98.03
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 91.73 92.09
CDX79993 Canola cytosol, peroxisome, plasma membrane 83.46 84.46
CDY42012 Canola cytosol, peroxisome, plasma membrane 82.68 83.67
KRH40357 Soybean endoplasmic reticulum 66.14 65.37
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 66.14 65.12
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 65.35 65.1
KRH00872 Soybean endoplasmic reticulum 65.75 64.48
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 66.54 64.26
KRH06560 Soybean endoplasmic reticulum 64.57 64.06
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.99 63.74
Solyc01g095200.2.1 Tomato plastid 65.35 63.12
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 65.75 63.02
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 61.81 62.8
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 61.81 62.55
KRG99174 Soybean endoplasmic reticulum, plasma membrane 21.26 62.07
CDY38194 Canola cytosol, nucleus, plasma membrane 61.02 62.0
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 61.02 61.75
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 60.63 61.35
GSMUA_Achr3P31920_001 Banana cytosol 52.76 61.19
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 60.63 61.11
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.45 60.89
Os01t0226300-01 Rice plasma membrane 42.52 60.67
TraesCS3A01G278800.1 Wheat golgi 59.06 60.48
Os01t0736900-01 Rice plasma membrane 60.24 60.47
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 59.84 60.08
Zm00001d012776_P001 Maize extracellular 59.84 60.08
Zm00001d043551_P003 Maize plasma membrane 60.63 59.92
Os05t0526400-01 Rice plasma membrane 59.06 59.76
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 59.06 59.52
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 57.87 59.27
CDY57657 Canola cytosol, nucleus, plasma membrane 64.17 59.27
EES19841 Sorghum cytosol, nucleus, plasma membrane 59.45 59.22
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 57.87 59.04
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 59.06 58.82
CDY24806 Canola cytosol 63.39 58.76
CDY44123 Canola cytosol, nucleus, plasma membrane 63.78 58.7
KXG33320 Sorghum cytosol, nucleus, plasma membrane 59.45 58.53
GSMUA_Achr4P08400_001 Banana cytosol 58.27 58.5
CDY10954 Canola cytosol 61.81 58.15
Zm00001d038768_P001 Maize extracellular, mitochondrion 57.48 57.48
CDY41666 Canola cytosol 62.2 57.25
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 56.3 57.2
CDX90792 Canola cytosol, peroxisome, plasma membrane 59.84 56.93
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 61.02 55.56
KXG31516 Sorghum cytosol, nucleus, plasma membrane 60.63 54.23
KRH48008 Soybean cytosol, peroxisome, plasma membrane 66.54 53.82
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 59.45 52.8
Zm00001d016041_P001 Maize extracellular 47.64 52.61
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 59.06 52.45
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.24 52.17
Zm00001d020229_P001 Maize plasma membrane 31.1 51.97
CDY07184 Canola cytosol, peroxisome, plasma membrane 49.61 51.85
CDY48510 Canola cytosol 49.61 51.85
Zm00001d020729_P001 Maize plasma membrane 19.29 51.58
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 46.46 50.86
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 60.63 50.33
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.81 50.0
CDY13240 Canola cytosol, peroxisome, plasma membrane 31.5 49.69
TraesCS1A01G346800.3 Wheat plasma membrane 48.82 49.21
CDY05135 Canola mitochondrion 59.45 48.24
HORVU3Hr1G030760.2 Barley mitochondrion 58.66 47.45
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 48.03 46.74
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 59.06 46.58
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.64 46.36
EER89811 Sorghum peroxisome 46.06 45.7
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.46 45.38
CDY62522 Canola cytosol 14.17 45.0
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.06 45.0
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.06 45.0
Os06t0503400-01 Rice plasma membrane 46.46 44.53
GSMUA_Achr3P15760_001 Banana cytosol 24.8 42.0
CDX89122 Canola extracellular, mitochondrion 24.8 41.18
HORVU7Hr1G081290.4 Barley plastid 36.61 40.26
CDY00916 Canola plasma membrane 37.8 40.17
CDY08616 Canola plasma membrane 37.4 39.75
HORVU7Hr1G075700.2 Barley mitochondrion 46.06 39.0
CDY66516 Canola endoplasmic reticulum, extracellular 27.56 37.63
CDX81500 Canola plasma membrane 30.71 37.5
CDX96038 Canola plasma membrane 30.71 36.97
CDY67571 Canola plasma membrane 32.28 36.61
CDX86802 Canola cytosol, nucleus, peroxisome 35.04 36.33
CDX75962 Canola plasma membrane 31.89 36.16
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 31.89 36.16
CDY01898 Canola plasma membrane 29.92 35.85
CDX67589 Canola golgi, plasma membrane, vacuole 27.17 33.99
CDY46172 Canola plastid 26.77 33.66
CDX99221 Canola plasma membrane 26.77 33.5
CDY51584 Canola plasma membrane 26.38 33.0
CDX78209 Canola golgi, plasma membrane, vacuole 26.38 32.68
CDX82294 Canola plastid 25.2 32.65
CDY22970 Canola plasma membrane 24.8 32.14
CDY22971 Canola plasma membrane 24.8 32.14
CDX73507 Canola cytosol, golgi, plasma membrane 25.59 31.71
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 29.13 30.96
CDY36282 Canola plasma membrane 26.38 30.04
CDY08567 Canola cytosol 28.35 29.88
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 23.62 29.56
CDX71213 Canola plasma membrane 23.23 29.06
CDY46067 Canola plasma membrane 22.05 26.92
CDX76854 Canola plasma membrane 21.65 26.57
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 25.59 26.21
CDY56712 Canola mitochondrion 36.61 26.2
CDY12701 Canola plasma membrane 31.1 26.16
Protein Annotations
MapMan:13.7.2.1GO:A0A078IQ61UniProt:A0A078IQ61EnsemblPlants:CDY52012ProteinID:CDY52012ProteinID:CDY52012.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00004714001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF95InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EEA92ESEG:seg
Description
BnaC06g42920DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ61]
Coordinates
chrLK033047:-:67902..69573
Molecular Weight (calculated)
28798.6 Da
IEP (calculated)
8.281
GRAVY (calculated)
0.157
Length
254 amino acids
Sequence
(BLAST)
001: MAEESEKPVH AEESLMEKIA EKIHDHHDSS SSSDSDHEKP ESPSALKAKI YRLFGREKPV HKVLGGGLPA DVFLWRDKKL SAAVLGVATA IWVLFELVEY
101: HLLSLVCHIL IFSLAAMFLW SNAHAFMKKS PPKIPEVHVK EEHFLLIASA LRNELNQAFV ILRSIALGRD LKKFLMVVVG LWIISVVGNW FNFLTLVYIC
201: FVVLHTVPML YEKHEDKVDP VAEKTLKELK KHYMVFDEKV LSKIPLASLK AKLG
Best Arabidopsis Sequence Match ( AT3G61560.1 )
(BLAST)
001: MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
Arabidopsis Description
RTNLB6Reticulon-like protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.