Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 77.63 | 65.89 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 73.52 | 64.14 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 71.69 | 62.55 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 70.78 | 61.51 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 67.58 | 58.5 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.67 | 57.25 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 64.84 | 56.35 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 65.3 | 56.3 |
| KRH59988 | Soybean | mitochondrion | 64.84 | 55.91 |
| Solyc03g007740.2.1 | Tomato | nucleus | 64.84 | 55.69 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 64.38 | 55.29 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 61.64 | 53.57 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 61.19 | 53.39 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 61.19 | 52.96 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 61.19 | 52.96 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 61.19 | 52.76 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 61.19 | 52.55 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.82 | 52.4 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 59.82 | 52.4 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 59.82 | 52.19 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.82 | 52.19 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.27 | 51.97 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 60.27 | 51.97 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 59.36 | 51.79 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.36 | 51.79 |
| Solyc01g095200.2.1 | Tomato | plastid | 62.1 | 51.71 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 62.56 | 51.7 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 58.9 | 51.6 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 58.9 | 51.39 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 61.64 | 51.33 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.9 | 50.99 |
| KRH40357 | Soybean | endoplasmic reticulum | 59.82 | 50.97 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 59.36 | 50.58 |
| KRH00872 | Soybean | endoplasmic reticulum | 59.82 | 50.58 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.45 | 50.39 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 61.19 | 49.63 |
| KRH06560 | Soybean | endoplasmic reticulum | 57.99 | 49.61 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 19.63 | 49.43 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 60.73 | 49.26 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 58.9 | 48.31 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 56.16 | 48.24 |
| Bra019285.1-P | Field mustard | cytosol | 58.9 | 48.13 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 54.79 | 48.0 |
| Bra000739.1-P | Field mustard | cytosol | 58.45 | 47.94 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 35.16 | 47.83 |
| CDY10954 | Canola | cytosol | 58.9 | 47.78 |
| AT4G23630.2 | Thale cress | nucleus | 59.82 | 47.64 |
| CDY62522 | Canola | cytosol | 17.35 | 47.5 |
| AT4G11220.1 | Thale cress | nucleus | 58.45 | 47.23 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 57.99 | 46.86 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 12.79 | 46.67 |
| Bra010539.1-P | Field mustard | cytosol | 57.08 | 46.47 |
| Bra013717.1-P | Field mustard | nucleus | 58.45 | 46.38 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 58.45 | 46.38 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 52.51 | 46.37 |
| CDY24806 | Canola | cytosol | 57.99 | 46.35 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 57.99 | 46.18 |
| CDY41666 | Canola | cytosol | 57.99 | 46.01 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 52.05 | 45.6 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 51.6 | 45.56 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 31.05 | 45.33 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 51.14 | 45.16 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 40.64 | 44.95 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 59.82 | 41.72 |
| CDY48510 | Canola | cytosol | 46.12 | 41.56 |
| Bra037369.1-P | Field mustard | cytosol | 46.12 | 41.56 |
| AT4G01230.2 | Thale cress | cytosol | 46.12 | 41.39 |
| CDY05135 | Canola | mitochondrion | 58.9 | 41.21 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 45.66 | 41.15 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 42.01 | 37.1 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 39.73 | 35.95 |
| KRG91601 | Soybean | mitochondrion | 51.6 | 33.24 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 33.79 | 33.18 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 33.33 | 31.74 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 31.96 | 31.39 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 29.68 | 30.95 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 34.25 | 30.61 |
| Bra035242.1-P | Field mustard | cytosol | 26.94 | 29.5 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.74 | 28.89 |
| GSMUA_Achr10P... | Banana | plasma membrane | 29.68 | 28.26 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 29.22 | 25.91 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 32.88 | 25.53 |
| CDX89122 | Canola | extracellular, mitochondrion | 17.35 | 24.84 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 29.22 | 24.24 |
| GSMUA_AchrUn_... | Banana | golgi | 36.07 | 22.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P31920_001 | EnsemblPlants:GSMUA_Achr3T31920_001 | EnsemblPlantsGene:GSMUA_Achr3G31920_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000295E746 | UniProt:M0SJK6 | MapMan:13.7.2.1 | : | : |
Description
Reticulon-like protein B1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G31920_001]
Coordinates
chr3:+:30005828..30010061
Molecular Weight (calculated)
24020.1 Da
IEP (calculated)
8.308
GRAVY (calculated)
0.274
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSCIKDSS SSDSDNEKTS EPSAADAVKA KIYRLFGREK AVHLILGGGK PADVFLWSNN KVSAATLGGA TATWVLFELL DYRLLTVACH TLIVSLAITF
101: LYSNATHFMN KSPPNIPVVS IPEDVAANIA LSLRYQINRG FAAFALGRDL KKFLAVIAGL WVLSILGNCC NFLTLFYIAF VMLHTVPVLY EKYEDQVDAF
201: AEKTQAEFKK HYAVVTAKT
101: LYSNATHFMN KSPPNIPVVS IPEDVAANIA LSLRYQINRG FAAFALGRDL KKFLAVIAGL WVLSILGNCC NFLTLFYIAF VMLHTVPVLY EKYEDQVDAF
201: AEKTQAEFKK HYAVVTAKT
001: MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
Arabidopsis Description
RTNLB6Reticulon-like protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN4]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.