Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 73.04 | 68.02 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 52.61 | 57.89 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 64.78 | 56.44 |
| KRH75801 | Soybean | plasma membrane | 50.43 | 55.5 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 50.0 | 55.02 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 50.0 | 55.02 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 48.26 | 53.11 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 43.91 | 49.75 |
| Bra003171.1-P | Field mustard | plasma membrane | 43.48 | 49.26 |
| CDY51584 | Canola | plasma membrane | 43.04 | 48.77 |
| Os04t0367400-02 | Rice | plasma membrane | 43.91 | 47.42 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 43.48 | 47.17 |
| Zm00001d042846_P001 | Maize | plasma membrane | 43.04 | 47.14 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 40.87 | 45.85 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 40.87 | 45.85 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 40.0 | 45.32 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 40.0 | 44.88 |
| OQU78555 | Sorghum | extracellular | 40.0 | 41.63 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 36.09 | 40.89 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 36.09 | 37.22 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 35.65 | 35.65 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 35.22 | 34.62 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 33.91 | 31.2 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 33.48 | 30.56 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 33.91 | 30.23 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 29.13 | 30.04 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 27.39 | 30.0 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 32.61 | 29.88 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 28.26 | 29.68 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 35.65 | 29.08 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 31.3 | 29.03 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 31.74 | 28.97 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 24.78 | 28.79 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 30.87 | 28.29 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 30.43 | 27.67 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 29.57 | 27.42 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 29.57 | 27.42 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 28.7 | 26.61 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 26.96 | 25.62 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 15.65 | 24.0 |
| GSMUA_AchrUn_... | Banana | golgi | 26.52 | 17.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P00790_001 | EnsemblPlants:GSMUA_Achr10T00790_001 | EnsemblPlantsGene:GSMUA_Achr10G00790_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002949030 | UniProt:M0REA6 | MapMan:13.7.2.1 | : | : |
Description
reticulon domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G00790_001]
Coordinates
chr10:+:1416063..1418850
Molecular Weight (calculated)
25888.5 Da
IEP (calculated)
6.920
GRAVY (calculated)
0.531
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MISVQDQPVA GSSPALQRSL HEILGGGILD LQELCLTVAD VILWRRRNVT IAVLLGALAS WLVFEVVGYT LLSLVSNVLL LLISILFLWA KAAEVLNRPP
101: PPMPEMHLSE EMIYEAAVLF RFHVNKVLSA FNDIVQGKDP KLFYTVALCL WLISMVGGLT DMLTLGYTSI AIILTVPALY EKYEDGLDRC MKLAHMQVKM
201: YEAVYTECLN KYFIKAKKWI LEKKKLITDV
101: PPMPEMHLSE EMIYEAAVLF RFHVNKVLSA FNDIVQGKDP KLFYTVALCL WLISMVGGLT DMLTLGYTSI AIILTVPALY EKYEDGLDRC MKLAHMQVKM
201: YEAVYTECLN KYFIKAKKWI LEKKKLITDV
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.