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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane, endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92955
KRG96730
KRH32567
KRH32570
KRH33832
KRH39309
KRH41254
KRH44347
KRH47274
KRH48364
KRH59988
KRH68153
KRH68446
KRH75546

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54120.1 KRH44347 AT1G52220.1 21798944
AT3G54120.1 KRH47274 AT1G52220.1 21798944
AT3G54120.1 KRG92955 AT1G56330.1 21798944
AT3G54120.1 KRG96730 AT1G56330.1 21798944
AT3G54120.1 KRH33832 AT1G56330.1 21798944
AT3G54120.1 KRH68446 AT1G56330.1 21798944
AT3G54120.1 KRH39309 AT2G20130.1 21798944
AT3G54120.1 KRH48364 AT2G20130.1 21798944
AT3G54120.1 KRH68153 AT3G28220.1 21798944
AT3G54120.1 KRH32567 AT3G53180.1 21798944
AT3G54120.1 KRH32570 AT3G53180.1 21798944
AT3G54120.1 KRH75546 AT3G53180.1 21798944
AT3G54120.1 KRH41254 AT4G11220.1 21798944
AT3G54120.1 KRH59988 AT4G11220.1 21798944
AT3G54120.1 KRH41254 AT5G41600.1 21798944
AT3G54120.1 KRH59988 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH75801 Soybean plasma membrane 92.82 92.82
VIT_08s0007g01720.t01 Wine grape plasma membrane 77.51 77.51
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 70.33 70.33
Solyc09g013110.2.1 Tomato cytosol, plasma membrane, vacuole 69.38 69.38
CDX67589 Canola golgi, plasma membrane, vacuole 54.55 56.16
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 54.55 56.16
Bra003171.1-P Field mustard plasma membrane 54.07 55.66
CDY51584 Canola plasma membrane 53.59 55.17
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 53.59 54.63
CDX78209 Canola golgi, plasma membrane, vacuole 53.59 54.63
CDX73507 Canola cytosol, golgi, plasma membrane 53.11 54.15
GSMUA_Achr10P... Banana plasma membrane 57.89 52.61
GSMUA_Achr8P02250_001 Banana cytosol, mitochondrion, peroxisome, plasma membrane 55.5 46.96
EES03891 Sorghum golgi, peroxisome, plasma membrane 45.45 44.81
Zm00001d042846_P001 Maize plasma membrane 43.54 43.33
Os04t0367400-02 Rice plasma membrane 44.02 43.19
GSMUA_Achr6P33560_001 Banana plasma membrane 54.07 42.8
KRG91024 Soybean plasma membrane 40.19 41.18
KRH35738 Soybean endoplasmic reticulum 39.23 40.2
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 38.28 39.41
KRG93546 Soybean plasma membrane 36.36 38.19
KRH18469 Soybean plasma membrane 33.97 35.86
OQU78555 Sorghum extracellular 37.8 35.75
KRG99174 Soybean endoplasmic reticulum, plasma membrane 13.4 32.18
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 34.93 31.2
KRH59988 Soybean mitochondrion 37.32 30.71
KRH35899 Soybean plasma membrane 31.1 30.66
KRH41254 Soybean cytosol, nucleus, plasma membrane 36.84 30.32
KRH00872 Soybean endoplasmic reticulum 36.84 29.73
KRH06560 Soybean endoplasmic reticulum 35.89 29.3
KRH40357 Soybean endoplasmic reticulum 35.89 29.18
KRH14529 Soybean cytosol, peroxisome, plasma membrane 33.01 28.16
KRH48561 Soybean plasma membrane 29.67 27.93
KRH39144 Soybean plasma membrane 29.67 27.93
KRH73588 Soybean plasma membrane 32.06 27.35
KRH45979 Soybean cytosol, nucleus, plasma membrane 30.62 26.34
KRH30696 Soybean plasma membrane 30.14 25.61
KRH76938 Soybean endoplasmic reticulum, plasma membrane 19.62 25.47
KRG99024 Soybean plasma membrane 31.58 25.0
KRH28521 Soybean endoplasmic reticulum 25.36 25.0
KRH35223 Soybean cytosol, nucleus, plasma membrane 29.19 24.4
KRH48008 Soybean cytosol, peroxisome, plasma membrane 35.41 23.57
KRG91601 Soybean mitochondrion 29.67 18.24
Protein Annotations
EntrezGene:100809125MapMan:13.7.2.1EMBL:ACUP02001857EnsemblPlantsGene:GLYMA_03G076200GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021
UniProt:I1JLS7InterPro:IPR003388ProteinID:KRH66003.1EnsemblPlants:KRH66004ProteinID:KRH66004ProteinID:KRH66004.1
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF65InterPro:ReticulonTMHMM:TMhelix
UniParc:UPI0002336B4ASEG:seg::::
Description
hypothetical protein
Coordinates
chr3:-:18827511..18830631
Molecular Weight (calculated)
23940.8 Da
IEP (calculated)
10.030
GRAVY (calculated)
0.384
Length
209 amino acids
Sequence
(BLAST)
001: MGSSDRLFNR QRSLHEILGG GQVADLILWR RKNLTVGILL VTLAVWVVFE RSGYTLLSLV SNVLLLLIVI LFLWAKSAAI LNRPAPPLPQ LHLSEEMANE
101: VKTFIRTRVN DLLSVSQDIA LGKDSRLFLK VAAYLWIISI IGGLTDFLTL AYTSLFIVLT VPAIYERYED YIDKYILKGY RKLCLLHLKI NEQYVNKVHN
201: WILEKKKLS
Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.