Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28521 | Soybean | endoplasmic reticulum | 90.68 | 68.87 |
| VIT_00s0253g00030.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 48.45 | 36.45 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 36.65 | 28.64 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 40.37 | 26.64 |
| Bra039207.1-P | Field mustard | plasma membrane | 32.92 | 25.48 |
| CDY46067 | Canola | plasma membrane | 32.92 | 25.48 |
| CDX76854 | Canola | plasma membrane | 31.68 | 24.64 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 13.04 | 24.14 |
| KRG91024 | Soybean | plasma membrane | 30.43 | 24.02 |
| KRH18469 | Soybean | plasma membrane | 29.19 | 23.74 |
| KRG93546 | Soybean | plasma membrane | 29.19 | 23.62 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 26.71 | 22.99 |
| KRH35738 | Soybean | endoplasmic reticulum | 28.57 | 22.55 |
| KRH75801 | Soybean | plasma membrane | 25.47 | 19.62 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 25.47 | 19.62 |
| KRH06560 | Soybean | endoplasmic reticulum | 29.81 | 18.75 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 29.19 | 18.5 |
| KRH59988 | Soybean | mitochondrion | 28.57 | 18.11 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 27.33 | 18.11 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 27.33 | 17.96 |
| KRH73588 | Soybean | plasma membrane | 27.33 | 17.96 |
| KRH35899 | Soybean | plasma membrane | 23.6 | 17.92 |
| KRH40357 | Soybean | endoplasmic reticulum | 28.57 | 17.9 |
| KRH00872 | Soybean | endoplasmic reticulum | 27.33 | 16.99 |
| KRH39144 | Soybean | plasma membrane | 22.98 | 16.67 |
| KRG99024 | Soybean | plasma membrane | 26.09 | 15.91 |
| KRH48561 | Soybean | plasma membrane | 21.74 | 15.77 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 29.81 | 15.29 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 22.36 | 14.4 |
| KRH30696 | Soybean | plasma membrane | 16.77 | 10.98 |
| KRG91601 | Soybean | mitochondrion | 22.98 | 10.88 |
Protein Annotations
| MapMan:13.7.2.1 | EMBL:ACUP02000646 | EnsemblPlantsGene:GLYMA_01G183200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | UniProt:I1J938 |
| InterPro:IPR003388 | EnsemblPlants:KRH76938 | ProteinID:KRH76938 | ProteinID:KRH76938.1 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF86 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0002956FA3 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:51851524..51852569
Molecular Weight (calculated)
18641.4 Da
IEP (calculated)
10.042
GRAVY (calculated)
0.277
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVFEFNFLA VVSWVAILVL ASIFLYANML RLLGKEPPNL LRLEVTEETT TRIAKTVRAW IKEAIRWLFL VGAEKEWPVF VGAVAALLLL SYIGSCMDLL
101: TLVYMGTLVG MAVPLTYVKN EDKIKRFVGW LREKHKRYYQ IIDEKTIQKI KSRIAKEKKT E
101: TLVYMGTLVG MAVPLTYVKN EDKIKRFVGW LREKHKRYYQ IIDEKTIQKI KSRIAKEKKT E
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
Arabidopsis Description
RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.