Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g090370.2.1 | Tomato | plasma membrane | 65.16 | 85.03 |
| VIT_00s0253g00030.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 35.66 | 40.65 |
| KRH76938 | Soybean | endoplasmic reticulum, plasma membrane | 26.64 | 40.37 |
| KRH28521 | Soybean | endoplasmic reticulum | 34.02 | 39.15 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 30.74 | 36.41 |
| Bra039207.1-P | Field mustard | plasma membrane | 30.74 | 36.06 |
| CDY46067 | Canola | plasma membrane | 30.74 | 36.06 |
| CDX76854 | Canola | plasma membrane | 30.33 | 35.75 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 23.36 | 27.27 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 21.72 | 25.98 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 25.82 | 24.71 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 15.57 | 24.68 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 26.23 | 24.15 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 23.77 | 23.77 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 26.23 | 23.7 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 22.54 | 23.11 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 23.77 | 22.83 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 22.54 | 21.74 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 8.2 | 21.28 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 21.31 | 20.39 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 20.49 | 16.67 |
Protein Annotations
| EntrezGene:102595147 | MapMan:13.7.2.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0071458 | GO:GO:0071782 | GO:GO:0071786 | InterPro:IPR003388 |
| UniProt:M1AMN6 | PFAM:PF02453 | EnsemblPlantsGene:PGSC0003DMG400010069 | PGSC:PGSC0003DMG400010069 | EnsemblPlants:PGSC0003DMT400026113 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF86 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI000296B906 | RefSeq:XP_006338755.1 |
| SEG:seg | : | : | : | : | : |
Description
24 kDa seed maturation protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010069]
Coordinates
chr2:-:44450095..44452009
Molecular Weight (calculated)
27621.8 Da
IEP (calculated)
9.710
GRAVY (calculated)
0.068
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MQISTTTSTD SPPPSPTPQL ENHSESNLQT STASPTPDVG KTSTDIIRDV ILWKRKSYSV VALLAATAIW LGLEVYGLTF ITLFSWIAMF VIAFTFLWGN
101: IHMLLGKDPL DMSRMYISDE SVVDAGTKFR ESVENSLRFL FSVSTKREWF VFAGTLASLG LLSVVASYLD LLTLLYIGIV VGLTVPVVYV KYEDKIKDLG
201: QRVRVRCHIY NSAVMERCHM YYRTIAERVK KMKSKLQQKK KKNE
101: IHMLLGKDPL DMSRMYISDE SVVDAGTKFR ESVENSLRFL FSVSTKREWF VFAGTLASLG LLSVVASYLD LLTLLYIGIV VGLTVPVVYV KYEDKIKDLG
201: QRVRVRCHIY NSAVMERCHM YYRTIAERVK KMKSKLQQKK KKNE
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
Arabidopsis Description
RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.