Factsheet for PGSC0003DMT400042905

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	78.15	97.89
KRG93546	Soybean	plasma membrane	57.98	69.35
KRH18469	Soybean	plasma membrane	56.72	68.18
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	58.82	60.87
Bra034153.1-P	Field mustard	plasma membrane	56.72	60.54
CDY36282	Canola	plasma membrane	56.72	60.54
Os03t0336600-02	Rice	plasma membrane	57.56	59.31
Zm00001d047517_P001	Maize	peroxisome	56.72	59.21
EER92307	Sorghum	peroxisome	56.72	59.21
TraesCS4A01G135900.1	Wheat	peroxisome	55.46	58.15
TraesCS4D01G171300.2	Wheat	peroxisome	55.04	57.71
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	54.62	57.27
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.3	56.07
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	55.88	55.65
CDY08567	Canola	cytosol	56.3	55.6
AT3G10915.7	Thale cress	plasma membrane	57.56	54.58
HORVU4Hr1G050020.1	Barley	plastid	55.46	50.97
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	38.66	44.02
PGSC0003DMT400066222	Potato	plasma membrane	32.35	37.75
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	48.74	35.47
PGSC0003DMT400074360	Potato	cytosol, nucleus, plasma membrane	36.13	33.99
PGSC0003DMT400014404	Potato	cytosol, plasma membrane, vacuole	12.61	31.91
PGSC0003DMT400051387	Potato	cytosol, nucleus, plasma membrane	33.61	31.37
PGSC0003DMT400049928	Potato	cytosol, nucleus, plasma membrane	33.61	31.37
PGSC0003DMT400032086	Potato	cytosol, nucleus, plasma membrane	34.87	30.74
PGSC0003DMT400000230	Potato	cytosol, nucleus, plasma membrane	33.61	30.19
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	30.67	29.92
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	29.83	27.95
PGSC0003DMT400078544	Potato	endoplasmic reticulum, plasma membrane, vacuole	17.65	27.27
PGSC0003DMT400074138	Potato	plasma membrane	32.35	25.67
PGSC0003DMT400026113	Potato	plasma membrane, plastid	23.11	22.54

Protein Annotations

EntrezGene:102582564	MapMan:13.7.2.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	UniProt:M1BDS1
PFAM:PF02453	EnsemblPlantsGene:PGSC0003DMG400016636	PGSC:PGSC0003DMG400016636	EnsemblPlants:PGSC0003DMT400042905	PFscan:PS50845	PANTHER:PTHR10994
PANTHER:PTHR10994:SF67	InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI000294953E	RefSeq:XP_006358753.1	SEG:seg

Description

Reticulon B16 [Source:PGSC_GENE;Acc:PGSC0003DMG400016636]

Coordinates

chr6:+:33806311..33812873

Molecular Weight (calculated)

26582.6 Da

IEP (calculated)

9.833

GRAVY (calculated)

0.295

Length

238 amino acids

Sequence
(BLAST)

001: MGHSDDLCNI EGNGDGRSNN GASGVPSTSA AASSAYKLFG RETSFHQMMG GGKAADVILW RRRRVSFGII VAATVAWIIF EYSELPFLSV SSDVLLILIV
101: LLFLRANYAA FRKKQLPALP ELVLSEEMVN NAAASFRVKI NYMLLMAHDI TLGKDFKLFF KVVIVLWLLS VIGSVISFFT LAYIGTIIFI TVPALYNKFE
201: DHVDRYAGKI HRQLSRHYKI VDESISRLPR SISKDKEL

Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.